Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01722 ATGGATCCAAAAGTGTGTGATGAATCAGTGAACGATTCTTCAGATTTCAAGTCTGAGAAGATTCTACACACAGTTGATAAATCAATTGCATGTCCCACTCCAGATAAGAAGACTGAACAATTACCCATCAAATTCAAACATCCCAAAACCCAGCTTCCAGAAAAGTACAAGACCATTGCTGATTTGTTTAATCATATGAGTTGTGCACTTAGATTGTTGCACCTGCGTAAAAAGTCTCCAACTTTTCAAAATATTTGCAGCAAGGTTGAAATTCTTGCCAAAAGAAACTTCTCCTATTCTAATCTAGCGCAGATGAAGTATATACTTCCTGAAGGTATAGAAATTGAAAAGGTGGTTGTTGTTGAGAAGAAGAGCTTGTGTATGAAACCGGATTTGAAGATCTCCTTGGTATTTGAAGTTCTAGAAGATCATTCAGAACAGTCTGCTTATATGGCTCTTGGAAGATGTTTTAATTCCAGGCTGATTAATTTCTCTAATCAGCATCCCGAGGGTACTGATATTCCAGAAGCCACACTACTGGAGCCCTTTAGCCAAAAAGCTTGTAACTTGATTTTCAAAGATGGACCCGTAGATCTATCAACTGAACTTTCATCGACTTGCAGTGAAGTTGAACTGTCGCTGAACAACTTACATTTGAGCCCATCTTTTAGAAGACAATTTTCTCAGAAGAATGGTACTGACCAGACTGAACAAGTTCAGTACTTTTCACCATCTACAAACTCGCTGTCAACCCATGAATCCGACTGCCTAGGCAACCAAGAAAGTGAAAGCATATCGCAGAAAGAACGTACACGATTGCCTGATTGTGTCAGTAATCTTAATGCAGAAAGAGGCAAGCAGAAGGAATCACCCTCAGTGGGTTTTCAACCAAATGTTACTAATACAACAGTACATAAGATCTCTTCTCCACATTCTGAAAGCCCTGATTGGAAAATTGTCTCTGGTACTGATAGTTTGGTGACACGGACACCAGCACAGTCAGCACCTGAAAGATTGGTGCTTGGTTCTGATGTTAAGATTAAAAAAATGACTGGTCAAAAGTCTACGTCCTGTTTTAAGCCTGCAAAAAGAGTGCTTGACTTTTCACTCACAGAAGGCAGTGATGATTTGGACAATAGAGTAGACATGTCAAAACCTAGCAGAGGATGTTCTGAGGACTTCAAATCTTTTGATTCTGTTTCCCTACTTCACGAGGTACAAGAGAACCTTTATTATTCTCTAGAGAAAATCAACCAAAATGAAATTGGAGTAGATGCATCGGATGACAATCCTTCATCATTGGTGGAACTGGTTAATGTGATTGACTCTATATTTAGTTCTGTCAAAAGGACTTCAATCACAAAAGAGGAGCTCCTGCAAAAGATAATGATGAACTGTTTAGATTTTGTCGAGATTAGCGAAGCTGAAGAACAAATCGAGATTTTGGAAAAGATTGTCCCGGATTGGATTTGCAAGAAGTTGGTTTCTTCTGGAGACACTATGTACTGCGTCAAGAAAGCGGTAAATTTGGAATCAGTTCGATCAAGACTACTCAGTAATGTGACCAAAGTAGATGAGTGA 1581 0.3909 MDPKVCDESVNDSSDFKSEKILHTVDKSIACPTPDKKTEQLPIKFKHPKTQLPEKYKTIADLFNHMSCALRLLHLRKKSPTFQNICSKVEILAKRNFSYSNLAQMKYILPEGIEIEKVVVVEKKSLCMKPDLKISLVFEVLEDHSEQSAYMALGRCFNSRLINFSNQHPEGTDIPEATLLEPFSQKACNLIFKDGPVDLSTELSSTCSEVELSLNNLHLSPSFRRQFSQKNGTDQTEQVQYFSPSTNSLSTHESDCLGNQESESISQKERTRLPDCVSNLNAERGKQKESPSVGFQPNVTNTTVHKISSPHSESPDWKIVSGTDSLVTRTPAQSAPERLVLGSDVKIKKMTGQKSTSCFKPAKRVLDFSLTEGSDDLDNRVDMSKPSRGCSEDFKSFDSVSLLHEVQENLYYSLEKINQNEIGVDASDDNPSSLVELVNVIDSIFSSVKRTSITKEELLQKIMMNCLDFVEISEAEEQIEILEKIVPDWICKKLVSSGDTMYCVKKAVNLESVRSRLLSNVTKVDE 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01722 526 CDD Cdt1_m 34 182 IPR014939 -
Trre11g01722 526 PANTHER DNA REPLICATION FACTOR CDT1 34 518 IPR045173 GO:0003677|GO:0030174|GO:0071163
Trre11g01722 526 SMART CDT1_2 52 181 IPR014939 -
Trre11g01722 526 Pfam DNA replication factor CDT1 like 52 117 IPR014939 -
Trre11g01722 526 MobiDBLite consensus disorder prediction 227 274 - -
Trre11g01722 526 Pfam DNA replication factor Cdt1 C-terminal domain 433 490 IPR032054 -
Trre11g01722 526 SUPERFAMILY "Winged helix" DNA-binding domain 45 183 IPR036390 -
Trre11g01722 526 MobiDBLite consensus disorder prediction 227 264 - -
Trre11g01722 526 Gene3D - 427 524 IPR038090 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01722 Trre-Chr11 16770909 16775857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01722 433 517 Core DNA Replication Machinery Family AT3G54710 44.706 1.11e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01722 K10727 - gmx:102670055 530.02