Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01678 ATGCTACTGATTCTTCTCCTGCTAATCAATAGCAGCAGCAGTGATGATGAGTGCACAGAATCATCTTGTGGACATAACCAACCGATTATTCGATTCCCCTTCCAACTAATCAAAGACTCACAAGATCAATGTGTTTATCCTAAGTTTTGCCTACATTGTACTGAAAATAAGAATACCATGCTTTTACTTCCTACCCCTTCAGGTCCAGTTGAATTCTTTGTCCCTCAAATCGACTACGAATTAAACCTAATCTTGATTTCAGACCCCGAAAATTGTCTTACAAAAAAGTTACTCAAACTTAACAGTTCATCATTTCTACCTTACCGATTCTATTCGGAATCAAAAGAAAAAATTTCCTTCTTCAACTGCTCTTCAGTTAGGAAACAACACCTTAGAAACCTTGATTTGGTAAATCAAAACTCACAAGATATGACTACCTGTCCAATTTACGCTTCTAGTTCGGACGAAAGTGTTATCGAATTAGACCTTGAGTCGTGTACCAAGATGTTTGATGTTAGTAGGAATTTCAGTGCAATGGATCTGAGGTCTAATCAACTGAGTTTGAGTTGGCCTATACCAAATTGTACGGTGTGTTCCGCGAAAGGCAAGAAATGTAGATGGAAGAACAATGCCACAAAAGGTGGTGGTGGTGACATTGAATGCTTTGTTTGCAATGTCGAACGAAAAACAAATCCAAATTTCAAAATCTGTTATTTTCGCTACTGCCGGTTCAATTCTGTTGGGGTTAGTCACCATTGCTTTAGTTAA 768 0.3802 MLLILLLLINSSSSDDECTESSCGHNQPIIRFPFQLIKDSQDQCVYPKFCLHCTENKNTMLLLPTPSGPVEFFVPQIDYELNLILISDPENCLTKKLLKLNSSSFLPYRFYSESKEKISFFNCSSVRKQHLRNLDLVNQNSQDMTTCPIYASSSDESVIELDLESCTKMFDVSRNFSAMDLRSNQLSLSWPIPNCTVCSAKGKKCRWKNNATKGGGGDIECFVCNVERKTNPNFKICYFRYCRFNSVGVSHHCFS 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01678 255 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 3 228 IPR046948 -
Trre11g01678 255 Pfam Wall-associated receptor kinase galacturonan-binding 18 87 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01678 Trre-Chr11 16472014 16472781 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01678 12 228 C3H Transcription Factor Family AT2G46495 28.571 5.63e-15 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01678 - - mtr:25482287 266.544