Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01677 ATGTGGTGGAAGAGAGTTATCTTGGTACTGCTGTTGTTGCCATTTACCTGCAATTCTAAACACAAGCATGCTTGTCCACCTTCATCCTGCGGCAAAATTTCGAAAATAAGTTACCCATTTCGATTACAAAATGACCCATTACATTGTGGTGACAGCAGGTATGAACTAACTTGTGAAAATAATGTGACAAGTTTATATTTATACTCTTCAAAATATCATGTGCAATCCATAAACTACAACAATTTTACAATCAGATTAGTTGATCCTGGTTTTCAACAATCTAATTGCTCTTCACTTCCACTCAAATCATTGTCTAGATCTGATTTCTGTGATACATATAATAATGATAACAAAAATTGTAACGACGCGTACCATGCACGTTACACTGAAGAAAGATATTTAAGTGCTTCTGGTGACTTGAATTTCAATGAGCAACTTCTTTTTGAGCATATAGTTTACTTGAATTGTACTAAAAAAGTTACTAAAAATTCTAAATATGTTCATACTGTTCCTTGTGTTAAATTGCACTCCAAGTCCAAATCCAAATCCAAAAGGTATTATATATATGCTATAGCTGGTGATTTAATTGCTCAAGATGTTCAAGCTGGTTGTGAAGTGAAACTAATGGCTCCAACATCTTTGTTGGGAAATTTGCATAGAAACAAAGGTATTTCCTATCATGTTATTCATGAGGCTTTAGTCTATGGATTTGAAGTTTCATGGTTGCATCTATCATGTCTCAATCATTGTGGAGATTTAGAGTCTTGCATCTTCAATGCTTTCACTGAGGAAATTGAATGCCATCCCAAAACCTGCTACTCTTATCTGTCATTTTCGGCCAGTACTAAATGCGGAAAATGGTCTCTGATTGCTTCAAAAGCTAGAGATGCCGCCATTCTTTTCTGGAGAGGACTTGTTGAAATAATAAAAAGATCAAACTCAAACTACAAAGGTTTTGGCTTCTATGAAATAGCATGGGATATTGGACATTATGTTCTACCATCATTTCTGTTGATAAGATTTCTATTTGGAATTACTCTTTTGATTACACTCCTGATATACAGATGGAGAAAAAGGCATTGGTCAATGTTTGAATGTATTGAAATGTATCTACAACAACAAAACAACCTCATGCCTATTGGATATTCATACAAAGAAATTAAGAAAATGGCAAGAGGTTTCAAAGAGAAGTTAGGAGAAGGAGGCTTTGGCACTGTGTTCAAGGGGAAACTTCGCAGCGGCCCTTTTGTGGCAATAAAGATGTTGGGTAAGGCGAAAGGTCACGAGCAAGACTTTGTTAGTGAAGTCGCAACCATTGGAAGAATACATCATTTGAATGTAGTACAATTACTTGGATTTTGTATCGAGGGATCAAAACGAGCTCTTATTTACGAATTCATGCCTAATGGATCTCTTGATAAATTTATATTCTCTAAAGAAAGGAGTTTAAATTTAAGCTACACAAGAATACATGATATTGCAATTGGAGTAGCTCGTGGAATTGCTTATCTCCATCACGGATGTGAAATGAAAATTTTGCATTTCGATATTAAGCCCCACAATATCCTGCTTGACGAGAACTTTATCCCAAAGATATCTGACTTTGGACTGGCAAAGCTATGTCCATTACAAAATAGCATTGTCACAATGACCGCAGCAAAAGGCACAATTGGATATATGGCTCCAGAATTGTTCTACAAAAATATTGGAGGAGTTTCCTATAAGGCCGATGTTTATAGCTTCGGCATGCTTTTGATGGAGATGGCAAGCAGAAGGAAAAACCTTAAATCCAATGTAGAGCATTCGAGCCAGATTTATTTTCCCTTTTGGATTTATGATCAACTCGAAAAAGAGGAAGAAATAGAAATAGAAAATGTCGCGGAGGAGGATATGAAAATAGTAAAGAAGATGATCATGGTCGCTCTTTGGTGTATACAATTGAAGCCGAATGATCGTCCCTCAATGAGTAAAGTGGTGGAGATGCTTGAAGGAGATATTGAAAGTATTGAAATGCCTCCACAACCAACTATATATCCAGATGAAATAGTTTCAAGAGATGAAACAATCAACTCAGATCAATCAATATCAAGTGACTTCATTAATTCTAGTGATTCTAGGGAAAACATGAGTAATCCTTTACTAGAAAATATTTCTTGA 2157 0.3565 MWWKRVILVLLLLPFTCNSKHKHACPPSSCGKISKISYPFRLQNDPLHCGDSRYELTCENNVTSLYLYSSKYHVQSINYNNFTIRLVDPGFQQSNCSSLPLKSLSRSDFCDTYNNDNKNCNDAYHARYTEERYLSASGDLNFNEQLLFEHIVYLNCTKKVTKNSKYVHTVPCVKLHSKSKSKSKRYYIYAIAGDLIAQDVQAGCEVKLMAPTSLLGNLHRNKGISYHVIHEALVYGFEVSWLHLSCLNHCGDLESCIFNAFTEEIECHPKTCYSYLSFSASTKCGKWSLIASKARDAAILFWRGLVEIIKRSNSNYKGFGFYEIAWDIGHYVLPSFLLIRFLFGITLLITLLIYRWRKRHWSMFECIEMYLQQQNNLMPIGYSYKEIKKMARGFKEKLGEGGFGTVFKGKLRSGPFVAIKMLGKAKGHEQDFVSEVATIGRIHHLNVVQLLGFCIEGSKRALIYEFMPNGSLDKFIFSKERSLNLSYTRIHDIAIGVARGIAYLHHGCEMKILHFDIKPHNILLDENFIPKISDFGLAKLCPLQNSIVTMTAAKGTIGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASRRKNLKSNVEHSSQIYFPFWIYDQLEKEEEIEIENVAEEDMKIVKKMIMVALWCIQLKPNDRPSMSKVVEMLEGDIESIEMPPQPTIYPDEIVSRDETINSDQSISSDFINSSDSRENMSNPLLENIS 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01677 718 SMART serkin_6 392 662 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g01677 718 Pfam Wall-associated receptor kinase galacturonan-binding 25 88 IPR025287 GO:0030247
Trre11g01677 718 ProSiteProfiles Protein kinase domain profile. 392 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g01677 718 SUPERFAMILY Protein kinase-like (PK-like) 373 663 IPR011009 -
Trre11g01677 718 Gene3D Transferase(Phosphotransferase) domain 1 467 671 - -
Trre11g01677 718 PANTHER RUST RESISTANCE KINASE LR10-RELATED 367 686 IPR045874 GO:0004672
Trre11g01677 718 MobiDBLite consensus disorder prediction 688 718 - -
Trre11g01677 718 ProSitePatterns Protein kinases ATP-binding region signature. 398 420 IPR017441 GO:0005524
Trre11g01677 718 MobiDBLite consensus disorder prediction 687 718 - -
Trre11g01677 718 ProSitePatterns Serine/Threonine protein kinases active-site signature. 512 524 IPR008271 GO:0004672|GO:0006468
Trre11g01677 718 FunFam PR5-like receptor kinase 467 674 - -
Trre11g01677 718 Pfam Protein tyrosine and serine/threonine kinase 394 662 IPR001245 GO:0004672|GO:0006468
Trre11g01677 718 FunFam serine/threonine-protein kinase PBS1-like 365 466 - -
Trre11g01677 718 Gene3D Phosphorylase Kinase; domain 1 368 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01677 Trre-Chr11 16467871 16470831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01677 6 703 Receptor kinase-like Gene Family AT5G38260 32.867 2.45e-113 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Trre11g01677 PK_Tyr_Ser-Thr 1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01677 - - tpra:123893257 970.304