Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01675 ATGACAACATCATCATCATCACACATGAAACATCATACATTTCACTTTGTTCTGACTTTGTTGTTCATCTTATTAAACCATACAAATTCTCAATCTCATTCAAATCAATATAATCAAGAACATAAAGTCCTATTAAATATTAAACAATACCTTCAAAACCCTTCTTTCCTTAACCATTGGACATCAAGTTCCAATCATTGTTCTTGGACAGAAATCATTTGTAGTGATGATTCTGTTGTTACTGGAATCACTCTTTCTCACATGAATATCACAAAAACAATTCCACCCTTTATTTGTAATGAGCTTAAGAACCTTACACATGTTGATTTCAGTTCCAATTTTATCCCTGGTGATTTTCCAACACTTTTTTATAATTGTTCAAATCTTGTTTACTTAGACCTTTCTTGGAACAATTTTGATGGTAAAATTCCTAATGATATTGGAAATTTGAGTCCTAGTTTGCAATATCTTAATCTTAGTTCAACAAATTTTCATGGTGGTGTTCCTGATGGGATTGGAAAGTTAAAGGAATTGAAAGAATTTAGAATTTTTTATTGTTCATTGAATGATACTGTTTCTGATGAGATTGGTGAATTGTTGAATCTTGAGTATTTTGATTTGTCCTCTAATGCTATGTTTCCTTCATGGAAATTACCATTGAGTTTGACCAAGTTGAATAAATTGAAGGTTTTTAATGTTTATGGCTGTAACCTGTTTGGTGAAATACCTCAAAGAATTGGAGATATGGTTTCTTTGGTGAGATTGGATATGTCAAGTAATAGTTTATCTGGTGAAATTCCTAGTGGATTGTTCATGTTGAAGAATTTGAGTATACTTTTTCTTAACAGGAACAATCTCTCTGGAGAGATACCTAGTTTGGTTGAATCATTGAATTTGACTAAACTTGATCTTGCAATCAACAATCTTGTAGGGAAAATACCAGATAATTTAGGAAAGCTGCAAAACTTAACATGGTTGAGTTTGTCTATGAATAGTTTATCAGGTGTGATACCAGAAAGTTTAGGCCTTCTTCCGTCTCTTACCGATTTTCGTGTGTTTTTGAACAATTTATCAGGTACTATTCCTCCTGGATTTGGTCGCAATTCAAAGCTCGAAACTTTTCATATTGCATCTAATAGTCTTGTTGGAAAGTTACCTGAGAGTTTATGCTATCATGGTGAGTTACTTAACTTGACAGCTTATGAAAATAGACTTAGTGGAGAGTTACCAAAATCACTAGGAAATTGTAGTAGCTTGTTGGACTTGAAAATTTACAGCAATGAATTTTCTGGTATTATTCCTAGTGGTCTTTGGACATCTTTCAATTTATCAAATTTCATGGTAAGCAATAATAAATTCAATGGTGTGATTCCAGAAAAGTTGTCTTCGAACATTTCACGGTTCGAGATAGCTAACAATTCATTTTCTGGTAGAATTCCATCTGGAGTATCTTCATGGACTAATGTGGTAGTGTTTGATGCAAGTAACAACTTCTTAAATGGAAGTATTCCACAAGAGATAACATCTCTTCCAAAATTAACAACTCTTTTGCTTGATCAGAATCAGCTCAATGGTCCACTTCCATCAGATATAGTATCATGGAAGTCCTTAGTAACTCTTAATTTGAGCCGAAACCAACTTTCTGGTCAAATTCCTGATGCAATTGGAAAATTACCTGTCCTAAGTCAACTTGATTTGTCTGAAAATGAATTTTCAGGCAAAGTTCCATCTCAACTTCCTAGACTCACCAATCTCAATCTGTCATCTAATCATTTGACAGGAAGGATTCCAGGTGAATTTCAAAATCAAGGGTTTGCTACAAGTTTTTTGGCTAATTCTGGTCTTTGTGCCGATACACCGATACTAAACATCACTTTGTGTAATTCTGGTATTCAAAGTGGAAACAAAAGATCATCATGGTCTATTGGTTTGATTATAGGCCTTGTGATAGTGGCAATTTTATTGGCTTTTTTGGCCAGTTTCTTGATTATCAAAGCTTTCAAGAAAAGAAACCAAGGTTTGGATAATTCATGGAAGCTTGTTTCCTTTCAGAGGCTCAGTTTCAATGAATCAAACATCGTCTCATCAATGACAGAACAAAATATTATTGGACGTGGTGGATATGGCATGGTATATCGAGTTGATGTTGCTGGTTTAGGTTATGTTGCTGTGAAAAAGATATGGAATAACAAAAAGTTAGACGAAAAACTCAAGAGTTCGTTTCACGCAGAAGTTAAAATATTGAGCAATATTCGTCATAACAACATTGTGAGATTGTTGTGTTGTATCTCTAATGACGATGCTATGCTTCTTGTCTATGAGTATCTTGAAAAACATAGTCTAGATAAGTGGTTGCGCACGAAGAGTAAGTCCTCGGCTTCAACTGTGCAAGGTTTAGTACAACAACATTTTGTTCTTGATTGGCCAAAGAGGTTGAAAATAGCTATTGGAGCTGCTCAAGGTTTGAGCTACATGCATCATGATTGTTCACCACCTATTATTCATAGAGATGTTAAAACAAGCAACATTCTTTTGGATGCTCAATTCAATGCAAAAATTGCTGATTTTGGACTTGCTAGGATTTTAGTCAAGCCAGACGAACTTAACACAATGTCATCTGTGATTGGCTCATTTGGCTACATTGCTCCAGAATATGTTCAAACAACAAGAGTTACTGAAAAGATTGATGTGTTTAGCTTTGGAGTTGTCCTATTGGAACTAACAACTGGTAAAGAAGCTAACTATGGAGACCAATACTCGTCTCTTTCGGAGTGGGCATGGCGTCAAACTTTGTTAGGAATCAATGTAGAAGAATTGCTAGACAAAGATGTGATGGAAGCTAGTTACTTGAATGAAATGTGCACAGTTTTCAAACTTGGTGTCATGTGTACTGCAACATTGCCTTCTAGTAGGCCTTCCATGAAAGAAGTCATTCAGATATTGCTTAGCTTTGCAGAACCAGTAGCTTATGGAAAGAATAAAGTTGGTCACTACTATGATGCTGATCCTCTTCTTAAGAATTCAAAAAGTGACACTAGGTTGGATGTTGATGATATGTGA 3060 0.3484 MTTSSSSHMKHHTFHFVLTLLFILLNHTNSQSHSNQYNQEHKVLLNIKQYLQNPSFLNHWTSSSNHCSWTEIICSDDSVVTGITLSHMNITKTIPPFICNELKNLTHVDFSSNFIPGDFPTLFYNCSNLVYLDLSWNNFDGKIPNDIGNLSPSLQYLNLSSTNFHGGVPDGIGKLKELKEFRIFYCSLNDTVSDEIGELLNLEYFDLSSNAMFPSWKLPLSLTKLNKLKVFNVYGCNLFGEIPQRIGDMVSLVRLDMSSNSLSGEIPSGLFMLKNLSILFLNRNNLSGEIPSLVESLNLTKLDLAINNLVGKIPDNLGKLQNLTWLSLSMNSLSGVIPESLGLLPSLTDFRVFLNNLSGTIPPGFGRNSKLETFHIASNSLVGKLPESLCYHGELLNLTAYENRLSGELPKSLGNCSSLLDLKIYSNEFSGIIPSGLWTSFNLSNFMVSNNKFNGVIPEKLSSNISRFEIANNSFSGRIPSGVSSWTNVVVFDASNNFLNGSIPQEITSLPKLTTLLLDQNQLNGPLPSDIVSWKSLVTLNLSRNQLSGQIPDAIGKLPVLSQLDLSENEFSGKVPSQLPRLTNLNLSSNHLTGRIPGEFQNQGFATSFLANSGLCADTPILNITLCNSGIQSGNKRSSWSIGLIIGLVIVAILLAFLASFLIIKAFKKRNQGLDNSWKLVSFQRLSFNESNIVSSMTEQNIIGRGGYGMVYRVDVAGLGYVAVKKIWNNKKLDEKLKSSFHAEVKILSNIRHNNIVRLLCCISNDDAMLLVYEYLEKHSLDKWLRTKSKSSASTVQGLVQQHFVLDWPKRLKIAIGAAQGLSYMHHDCSPPIIHRDVKTSNILLDAQFNAKIADFGLARILVKPDELNTMSSVIGSFGYIAPEYVQTTRVTEKIDVFSFGVVLLELTTGKEANYGDQYSSLSEWAWRQTLLGINVEELLDKDVMEASYLNEMCTVFKLGVMCTATLPSSRPSMKEVIQILLSFAEPVAYGKNKVGHYYDADPLLKNSKSDTRLDVDDM 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01675 1019 FunFam Receptor-like protein kinase HSL1 677 775 - -
Trre11g01675 1019 SMART serkin_6 697 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g01675 1019 ProSitePatterns Serine/Threonine protein kinases active-site signature. 833 845 IPR008271 GO:0004672|GO:0006468
Trre11g01675 1019 Gene3D Ribonuclease Inhibitor 353 625 IPR032675 -
Trre11g01675 1019 Gene3D Ribonuclease Inhibitor 28 87 IPR032675 -
Trre11g01675 1019 Pfam Leucine Rich Repeat 128 150 IPR001611 GO:0005515
Trre11g01675 1019 Pfam Leucine Rich Repeat 581 602 IPR001611 GO:0005515
Trre11g01675 1019 SUPERFAMILY Protein kinase-like (PK-like) 692 981 IPR011009 -
Trre11g01675 1019 ProSitePatterns Protein kinases ATP-binding region signature. 703 726 IPR017441 GO:0005524
Trre11g01675 1019 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 73 273 - -
Trre11g01675 1019 Pfam Protein kinase domain 699 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g01675 1019 SUPERFAMILY RNI-like 295 600 - -
Trre11g01675 1019 SMART LRR_typ_2 510 534 IPR003591 -
Trre11g01675 1019 SMART LRR_typ_2 126 150 IPR003591 -
Trre11g01675 1019 SMART LRR_typ_2 320 343 IPR003591 -
Trre11g01675 1019 SMART LRR_typ_2 579 602 IPR003591 -
Trre11g01675 1019 SMART LRR_typ_2 249 273 IPR003591 -
Trre11g01675 1019 SMART LRR_typ_2 535 558 IPR003591 -
Trre11g01675 1019 ProSiteProfiles Protein kinase domain profile. 697 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g01675 1019 Gene3D Transferase(Phosphotransferase) domain 1 776 995 - -
Trre11g01675 1019 Gene3D Ribonuclease Inhibitor 88 294 IPR032675 -
Trre11g01675 1019 FunFam Receptor-like protein kinase HSL1 isoform A 303 627 - -
Trre11g01675 1019 FunFam Kinase family with leucine-rich repeat domain-containing protein 776 997 - -
Trre11g01675 1019 Gene3D Ribonuclease Inhibitor 295 352 IPR032675 -
Trre11g01675 1019 SUPERFAMILY L domain-like 48 380 - -
Trre11g01675 1019 Pfam Leucine rich repeat N-terminal domain 38 75 IPR013210 -
Trre11g01675 1019 PANTHER UNNAMED PRODUCT 218 913 - -
Trre11g01675 1019 Gene3D Phosphorylase Kinase; domain 1 674 775 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01675 Trre-Chr11 16452477 16455817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01675 36 1018 Receptor kinase-like Gene Family AT5G25930 47.273 0.0 884
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre11g01675 Pkinase 2.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01675 - - gmx:100813894 1434.47