Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01672 ATGGCATCATCAATCCCTCAAGTCATAACCTGCAAAGCTGCAGTGGCATGGGGAGCTGGAGAGGCATTGGTAATGGAGGAAGTGGAAGTCAGTCCTCCTCAACCATTGGAAATTAGGATTAAGGTTGTCTCCACCTCTCTCTGTCGTAGTGATCTTTCTGCTTGGGAATCTCATGCGATATTTCCTCGCATATTTGGCCACGAAGCATCTGGGGTTGTTGAGAGTGTAGGGCTAGGAGTGACTGAATTCAAAGAAGGGGACCATGTGTTAACAGTTTTTATCGGAGAATGCATGTCATGCAGGCCGTGCAAATCAGGAAAAAGCAATATTTGTCAAGTTTTGGGATTAGAAAGAAAGGGTTTAATGCATAGTGATCAAAAGACGAGATTTACAGTAAAAGGGAAACCTGTTTATCATTATTGCGGTGTTTCAAGTTTTAGTGAATATACAGTCGTCCATTCTGGATGTGCCGTGAAAGTCGGTCCTCACGTACCTCTTGAGAAAATATGCCTTCTTAGCTGCGGGGTTGCTGCAGGTCTAGGTGCAGCATGGAACGTTGCGGATGTGACAAAAGGATCAACAGTGGTTATATTTGGTCTTGGAACTGTTGGCCTTTCTGTTGCTCAAGGTGCCAAACTAAGGGGTGCATCTAGAATAATTGGTGTTGACAACAATCCACAGAAGTGTGAAAATGCTAAATCTTTTGGGATTAAAGAAGTCGTTGATCCGAATTCGTACAAAGAACCTATCGTGCAGGTTATTAAGCGCATTACTGATGGTGGCGCAGATTTCTGTTTTGAATGCGTAGGTGACACTGATACGATAACCACCGCATTGCAATCATGCTGTGATGGATGGGGTTTGACTGTAACACTTGGTGTGCCAAAGGTGAAGCCTGAGATGTCAGCTCATTATGGACTATTCCTAACAGGAAGAACATTAAAAGGATCTCTATTTGGAGGATGGAAACCTAAAACTGATCTTCCTTCATTAGTAGAGAAGTATGTGAACAAGGAAATCCAGATTGATGACTACATAACACACAATTTGGCATTTGATGAGATTAACAAAGCTTTCAATCTCATGAAGGAAGGAAAGTGTCTTCGTTGTGTTATCCATATGCCAAGATAA 1131 0.4244 MASSIPQVITCKAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESHAIFPRIFGHEASGVVESVGLGVTEFKEGDHVLTVFIGECMSCRPCKSGKSNICQVLGLERKGLMHSDQKTRFTVKGKPVYHYCGVSSFSEYTVVHSGCAVKVGPHVPLEKICLLSCGVAAGLGAAWNVADVTKGSTVVIFGLGTVGLSVAQGAKLRGASRIIGVDNNPQKCENAKSFGIKEVVDPNSYKEPIVQVIKRITDGGADFCFECVGDTDTITTALQSCCDGWGLTVTLGVPKVKPEMSAHYGLFLTGRTLKGSLFGGWKPKTDLPSLVEKYVNKEIQIDDYITHNLAFDEINKAFNLMKEGKCLRCVIHMPR 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01672 376 FunFam Alcohol dehydrogenase 6 14 194 - -
Trre11g01672 376 Gene3D - 179 317 - -
Trre11g01672 376 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 66 80 IPR002328 GO:0008270|GO:0016491
Trre11g01672 376 Gene3D - 14 369 - -
Trre11g01672 376 FunFam S-(hydroxymethyl)glutathione dehydrogenase 179 317 - -
Trre11g01672 376 Pfam Alcohol dehydrogenase GroES-like domain 37 159 IPR013154 -
Trre11g01672 376 SUPERFAMILY GroES-like 6 184 IPR011032 -
Trre11g01672 376 Pfam Zinc-binding dehydrogenase 203 324 IPR013149 -
Trre11g01672 376 PANTHER ALCOHOL DEHYDROGENASE 7 372 - -
Trre11g01672 376 SUPERFAMILY GroES-like 325 373 IPR011032 -
Trre11g01672 376 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 164 338 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01672 Trre-Chr11 16429745 16433553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01672 14 111 Monolignol Biosynthesis Gene Families AT2G21730 36.190 6.76e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01672 K00001 - gmx:100819938 709.909