Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01644 ATGGAGATAGAACCAAGTTATAATAAACCAACAACAACATTAGGAAATGAAGTAGTAGCTACAAATTTACCAACTTTGAGTCCATTAAGTGAAACCCTTTGGAGAGAAAAAACAAAAACAGAGTTCATTGGTGATGTATCAGCAAGATTAACATGGAAAGATTTAACTGTTATGGTAACATTAAACAATGGTGAAACACAAAATGTTTTGGAGAATTTAACTGGTTATGCTGAACCAGGTTATTTTACTGCTCTTATGGGACCTTCTGGTTCTGGAAAATCAACTCTTCTTGATGCACTTTCTAGTCGTTTAGCTTCTAATTGTTTTCAATCTGGTACTGTTCTTCTTAATGGTCGCAAAGAAAAGTTATCTTTTGGAACTGCTGCATATGTAACACAAGATGACAACTTAATTGGAACATTAACAGTAAGAGAAACAATTTGGTATTCAGCTAGATTACGATTACCAGATAAAATGTCAAGATCAGATAAAAGAGCTTTAGTTGAAAGCACAATAGTTGCAATGGGACTTCAAGATTGTGCTGACACAGTTATTGGTAATTGGCATTTACGTGGGATAAGTGGTGGTGAAAAAAGAAGAGTTAGTATTGCATTGGAAATATTGATGAGACCTAGATTGCTTTTTCTTGATGAACCAACTAGTGGACTCGACAGTGCATCAGCTTTCTTTGTGACACAAACACTACGTGCATTGGCAAGGGATGGAAGAACAGTGATAGCTTCAATTCATCAACCTAGCAGTGAAGTGTTTGAACTATTTGACCAATTGTACTTGCTTTCTGGTGGCAAAACTGTTTATTTTGGCCAAGCTTCAGAAGCATATGAGTTCTTTGCACAAGCTGGATTTCCATGCCCTGCTTTGAGGAACCCCTCTGATCATTTCCTTAGATGCATCAATTCTGACTTTGATAAAGTCAAAGCCACTCTTAAAGGGTCCATGAAATTAAGGTTTGAGGGAAGTGATGATCCTCTAGACAAGATAACCACTTCTGAAGCAATCAGAACACTTATAGATTTCTACCGCACTTCTCAACACTCTTATGCTGCAAGACAAAAAGTTGATGAGATATCCAAAGTTAGAGGAACGGTGCTTGAAGCAGGAGGAAGTGAAGCTAGTTTCTTGTTGCAATGTTACATATTAACCAAACGTTCATTCATTAACATGTCAAGGGATTTTGGTTACTATTGGCTTAGGCTTGTAATCTACATTGTGGTCACTATATGCATTGGAACAATTTACTTGAATGTTGGGACTAGCTATAACGCAATTCTGGCTAGAGGTTCATGTGCATCTTTTGTCTTTGGTTTTGTCACCTTCATGTCAATTGGTGGATTTCCTTCATTTGTTGAAGATATGAAGGTTTTTCAAAGGGAGAGACTAAATGGACACTATGGTGTGACTGCATTTGTTATAAGCAACACATTATCAGCAACACCATTTCTGATATTAATCACTTTTCTCTCTGGAACAATTTGTTACTTCATGGTTCAACTACACCCTGGCTTTTCACATTATGTTTTCTTTGTGCTCTGCCTTTATGCAAGTGTCACAGTTGTTGAAAGCTTAATGATGGCAATTGCTAGTATTGTTCCTAACTTTCTCATGGGAATTATCATTGGAGCAGGAATTCAAGGAATATTCATGTTGGTCTCTGGCTACTTTAGGCTCCCACATGATATCCCAAAGCCTGTTTGGCGCTATCCAATGTCATACATCAGTTTCCACTTTTGGGCTTTACAGGGTCAATACCAAAACGATCTAAGGGGTTTGATATTCGACAACCAAACACCAGATCTTCCTAAGATACCAGGCGAATACATCTTGGAGTATGTGTTCCAAATTACCGTGACTAGATCAAAATGGATAGATTTAAGCGTGATCTTAAGCATGATCGTCATATATCGCATTATTTTCTTCATCATGATCAAAATCAATGAAGATGTTACTCCTTGGGTTAGAGGCTATCTTGCTAGGAGAAGAATGCAACAAAAAAGTGGAGCTCAGAATACAACTATTGCACCTGATGTTCTCACTCAATCTCCATCTTTGAGAACTTATATTTCCAATCAAAAGTAG 2097 0.3734 MEIEPSYNKPTTTLGNEVVATNLPTLSPLSETLWREKTKTEFIGDVSARLTWKDLTVMVTLNNGETQNVLENLTGYAEPGYFTALMGPSGSGKSTLLDALSSRLASNCFQSGTVLLNGRKEKLSFGTAAYVTQDDNLIGTLTVRETIWYSARLRLPDKMSRSDKRALVESTIVAMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALARDGRTVIASIHQPSSEVFELFDQLYLLSGGKTVYFGQASEAYEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLRFEGSDDPLDKITTSEAIRTLIDFYRTSQHSYAARQKVDEISKVRGTVLEAGGSEASFLLQCYILTKRSFINMSRDFGYYWLRLVIYIVVTICIGTIYLNVGTSYNAILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVISNTLSATPFLILITFLSGTICYFMVQLHPGFSHYVFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGYFRLPHDIPKPVWRYPMSYISFHFWALQGQYQNDLRGLIFDNQTPDLPKIPGEYILEYVFQITVTRSKWIDLSVILSMIVIYRIIFFIMIKINEDVTPWVRGYLARRRMQQKSGAQNTTIAPDVLTQSPSLRTYISNQK 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01644 698 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 50 293 IPR003439 GO:0005524
Trre11g01644 698 Pfam ABC transporter 70 221 IPR003439 GO:0005524
Trre11g01644 698 CDD ABCG_EPDR 47 275 - -
Trre11g01644 698 ProSitePatterns ABC transporters family signature. 193 207 IPR017871 GO:0005524|GO:0016887
Trre11g01644 698 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 287 IPR027417 -
Trre11g01644 698 Gene3D - 43 288 IPR027417 -
Trre11g01644 698 Pfam ABC-2 type transporter 250 306 IPR043926 GO:0140359
Trre11g01644 698 Pfam ABC-2 type transporter 383 589 IPR013525 GO:0016020|GO:0140359
Trre11g01644 698 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 39 671 - -
Trre11g01644 698 FunFam ABC transporter G family member 11 44 287 - -
Trre11g01644 698 SMART AAA_5 79 250 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01644 Trre-Chr11 16188356 16196776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01644 68 254 Calmodulin-binding Proteins AT2G36910 33.333 4.28e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01644 K05681 - gmx:100816389 1239.56