Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01612 ATGGATCCATCTTTGAGATCTCATCTTTTAAGAAAGGTTCCTATTACATACCAGTGGGAGATCCATGTTTCTAGATCTGTGGCAAGGGGTGGAAACGTTTTGAATTTTCCCAGGGAATATACAAGAAATTGTTTGAAGAAGGCTCATACGACTATATATCTGGTTGATTCATCTAGTGGAAGGGTATTTAGATCACCAATTTTTACTTCATCAAAGCATGATGAAGATAAATTTATTTATTCTGGCTGGATTAGATTCGTCAAAGCTAATTCACTTCGTTTTAAAGATAAAGTTGTGTTGAATGCTAAGCATGGAAATAATGTACTTGATGTCCACATTATTCGTGGATCACAATCTTCTTGA 363 0.3499 MDPSLRSHLLRKVPITYQWEIHVSRSVARGGNVLNFPREYTRNCLKKAHTTIYLVDSSSGRVFRSPIFTSSKHDEDKFIYSGWIRFVKANSLRFKDKVVLNAKHGNNVLDVHIIRGSQSS 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01612 120 Gene3D - 14 118 IPR015300 -
Trre11g01612 120 ProSiteProfiles B3 DNA-binding domain profile. 19 117 IPR003340 GO:0003677
Trre11g01612 120 SUPERFAMILY DNA-binding pseudobarrel domain 25 116 IPR015300 -
Trre11g01612 120 Pfam B3 DNA binding domain 32 116 IPR003340 GO:0003677
Trre11g01612 120 CDD B3_DNA 34 115 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01612 Trre-Chr11 15720783 15721406 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre11g01612 B3 7.1e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01612 - K05931 tpra:123882118 129.028