Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01611 ATGGTTTATGAAATGTCTCATTTCTCTATATTCCCACAGCTTGGTTCCTATCGAACAACTCTTCATCCACACAAACTTTTGTTCCAGCTCAAGACCACTGTTAAATTGTCGGATGATTCATCTGATATTAACAAATATGGTTTTAATTTCACTGAAATTGCTGAAATATGTGCTAATTCTCATGATCATGAGTTTTTAGTTGACGTTATTGGATATATGAGTGGTATGTCTGCTGAAAAGGAGTACATTAGAGATGGGAAGATAACCAAAATGGTTATTTTTGAGTTGACTGATCATAGTGGTAAGTGTGAGGTTGCTTTGTTTGGCGATTATGTTCATGATCTGAAAAAGAAGATGTTGAAATCATCTGGTTGTCTGCCTATAGTTGTTGTTCAGTTTGCTAAAATCAAAACTTTTAGAGATAAAGTTTCCCTTCAAAATGTCATTAACACAACTAGGCTTTTTATAAACCCTGATATTCCTGATGTTGAGTCCTTCAAAAATAGTGTTGCTGTTCATGGTATTGAGTCTGATATTCCTGTTCCATTAATTGGTGAACCTGAGAAACCTTCTGCTGAAGATGAATTCCTTATTTTGCATCCCAAAAGGACTGTTGCTGAATTGATTAATAATAATGAAGAAGGTTTATTTTCTGTTTGTGCTGAAATTATTGGCGTTGTGAGTGGTGCTGATTGGTGGTATCCTGCATGCAAGTGTCACAAGAGTGTTATCACAGATTCTGGTTCTTATTTTTGTGATGGTTGTGGCAGGCATGTCTTTCAAGTTGTTCCTAGGTTTAGGGTGAAATTTGAGGTCACTGATGGCAAAGCTTGTGCTGTTTTTGTGATCTTTGATTCTGAAATGAGTTACATAATGGAAAAGTCATGCGCCTATTTTGTTGCTCAGTCTAAGGCAACAAATGCTGGTCCACATCCCATTGAATTTGAAAGTTTGTTTGGCAAGAAATTTCTCTTTGTTGTTGATTCATCCTCAAAGAATCCATTACTCACTGACCTTTCCTATAAGGTTAAAAGGATTTCATTTGACCCCAAAATAATTGATCGCTTTTGTGCACAGGGTCCATTTCTTATTCCCTCCAAGCCAATGTCTCCCCCTATCAATGTTGATACTGATAGTGCTTCTGGTTCATCTGATGATGTTGCTGAGGATTCCGAGCCCGTTGAATTTTTGAAGGATCTTATTATCACACCACCTGCTGCTCTTGAAGATTCTGTGGTGAAGGATGAAGTTGCTGGTCGTGTTAAGAGAACACTCTCCAAGACTTACGATTCTGCTGGGAAGCGTCAGTTTAACAAGCGCACCAGGAAATTGAAGATCGATGAAGATTGA 1350 0.377 MVYEMSHFSIFPQLGSYRTTLHPHKLLFQLKTTVKLSDDSSDINKYGFNFTEIAEICANSHDHEFLVDVIGYMSGMSAEKEYIRDGKITKMVIFELTDHSGKCEVALFGDYVHDLKKKMLKSSGCLPIVVVQFAKIKTFRDKVSLQNVINTTRLFINPDIPDVESFKNSVAVHGIESDIPVPLIGEPEKPSAEDEFLILHPKRTVAELINNNEEGLFSVCAEIIGVVSGADWWYPACKCHKSVITDSGSYFCDGCGRHVFQVVPRFRVKFEVTDGKACAVFVIFDSEMSYIMEKSCAYFVAQSKATNAGPHPIEFESLFGKKFLFVVDSSSKNPLLTDLSYKVKRISFDPKIIDRFCAQGPFLIPSKPMSPPINVDTDSASGSSDDVAEDSEPVEFLKDLIITPPAALEDSVVKDEVAGRVKRTLSKTYDSAGKRQFNKRTRKLKIDED 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01611 449 Gene3D - 199 349 IPR012340 -
Trre11g01611 449 CDD RPA1_DBD_C 217 346 IPR047192 -
Trre11g01611 449 CDD RPA1_DBD_B_like 68 170 - -
Trre11g01611 449 MobiDBLite consensus disorder prediction 368 388 - -
Trre11g01611 449 SUPERFAMILY Nucleic acid-binding proteins 48 174 IPR012340 -
Trre11g01611 449 Pfam Replication factor-A C terminal domain 224 305 IPR013955 -
Trre11g01611 449 Pfam Domain of unknown function DUF223 4 66 IPR003871 -
Trre11g01611 449 SUPERFAMILY Nucleic acid-binding proteins 206 328 IPR012340 -
Trre11g01611 449 Gene3D - 41 177 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01611 Trre-Chr11 15717747 15719821 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01611 2 300 Core DNA Replication Machinery Family AT4G19130 22.956 1.81e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01611 - - tpra:123904946 514.998