Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01610 ATGGTGTTTAATGAGAATGAGAATGATTCGTCTAAAAATAATTTTGATGATATTGCTGATATATTTCCCCTCAAAGAGAGTGTTTCTATTAAAGTCAGGGTACTTCGAATGTGGAAGGTTCCTGCTTTCCTGAATCCATCAATTCCAAGTTCCATTGAAATGGTTTTAATTGATCAGAAGGGTGGGAAAATTCATGCCTCAATTAGGAAGCAATTGATCCATGTATTTGAGGCAAAGATTGAAGAGGGAATGGTTTATGAAATGTCTCATTTCTCTATATTCCCACAGCTTGGTTCCTATCGAACAACTCTTCATCCACACAAACTTTTGTTCCAGCTCAAGACCACTGTTAAATTGTCGGATGATTCATCTGATATTAACAAATATGGTTTTAATTTCACTGAAATTGCTGAAATATGTGCTAATTCTCATGATCATGAGTTTTTAGTTGACGTTATTGGATATATGAGTGGTATGTCTGCTGAAAAGGAGTACATTAGAGATGGGAAGATAACCAAAATGGTTATTTTTGAGTTGACTGATCATAGTGGTAAGTGTGAGGTTGCTTTGTTTGGCGATTATGTTCATGATCTGAAAAAGAAGATGTTGAAATCATCTGGTTGTCTGCCTATAGTTGTTGTTCAGTTTGCTAAAATCAAAACTTTTAGAGATAAAGTTTCCCTTCAAAATGTCATTAACACAACTAGGCTTTTTATAAACCCTGATATTCCTGATGTTGAGTCCTTCAAAAATAGTGTTGCTGTTCATGGTATTGAGTCTGATATTCCTGTTCCATTAATTGGTGAACCTGAGAAACCTTCTGCTGAAGATGAATTCCTTATTTTGCATCCCAAAAGGACTGTTGCTGAATTGATTAATAATAATGAAGAAGGTTTATTTTCTGTTTGTGCTGAAATTATTGGCGTTGTGAGTGGTGCTGATTGGTGGTATCCTGCATGCAAGTGTCACAAGAGTGTTATCACAGATTCTGGTTCTTATTTTTGTGATGGTTGTGGCAGGCATGTCTTTCAAGTTGTTCCTAGGTTTAGGGTGAAATTTGAGGTCACTGATGGCAAAGCTTGTGCTGTTTTTGTGATCTTTGATTCTGAAATGAGTTACATAATGGAAAAGTCATGCGCCTATTTTGTTGCTCAGTCTAAGGCAACAAATGCTGGTCCACATCCCATTGAATTTGAAAGTTTGTTTGGCAAGAAATTTCTCTTTGTTGTTGATTCATCCTCAAAGAATCCATTACTCACTGACCTTTCCTATAAGGTTAAAAGGATTTCATTTGACCCCAAAATAATTGATCGCTTTTGTGCACAGGGTCCATTTCTTATTCCCTCCAAGCCAATGTCTCCCCCTATCAATGTTGATACTGATAGTGCTTCTGGTTCATCTGATGATGTTGCTGAGGATTCCGAGCCCGTTGAATTTTTGAAGGATCTTATTATCACACCACCTGCTGCTCTTGAAGATTCTGTGGTGAAGGATGAAGTTGCTGGTCGTGTTAAGAGAACACTCTCCAAGACTTACGATTCTGCTGGGAAGCGTCAGTTTAACAAGCGCACCAGGAAATTGAAGATCGATGAAGATTGA 1599 0.374 MVFNENENDSSKNNFDDIADIFPLKESVSIKVRVLRMWKVPAFLNPSIPSSIEMVLIDQKGGKIHASIRKQLIHVFEAKIEEGMVYEMSHFSIFPQLGSYRTTLHPHKLLFQLKTTVKLSDDSSDINKYGFNFTEIAEICANSHDHEFLVDVIGYMSGMSAEKEYIRDGKITKMVIFELTDHSGKCEVALFGDYVHDLKKKMLKSSGCLPIVVVQFAKIKTFRDKVSLQNVINTTRLFINPDIPDVESFKNSVAVHGIESDIPVPLIGEPEKPSAEDEFLILHPKRTVAELINNNEEGLFSVCAEIIGVVSGADWWYPACKCHKSVITDSGSYFCDGCGRHVFQVVPRFRVKFEVTDGKACAVFVIFDSEMSYIMEKSCAYFVAQSKATNAGPHPIEFESLFGKKFLFVVDSSSKNPLLTDLSYKVKRISFDPKIIDRFCAQGPFLIPSKPMSPPINVDTDSASGSSDDVAEDSEPVEFLKDLIITPPAALEDSVVKDEVAGRVKRTLSKTYDSAGKRQFNKRTRKLKIDED 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01610 532 SUPERFAMILY Nucleic acid-binding proteins 13 127 IPR012340 -
Trre11g01610 532 SUPERFAMILY Nucleic acid-binding proteins 289 411 IPR012340 -
Trre11g01610 532 Gene3D - 124 260 IPR012340 -
Trre11g01610 532 Pfam Replication factor-A C terminal domain 307 388 IPR013955 -
Trre11g01610 532 CDD RPA1_DBD_A_like 29 117 - -
Trre11g01610 532 CDD RPA1_DBD_B_like 151 253 - -
Trre11g01610 532 PANTHER OS03G0429900 PROTEIN 18 414 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre11g01610 532 MobiDBLite consensus disorder prediction 451 471 - -
Trre11g01610 532 Gene3D - 13 119 IPR012340 -
Trre11g01610 532 CDD RPA1_DBD_C 300 429 IPR047192 -
Trre11g01610 532 Pfam Domain of unknown function DUF223 53 149 IPR003871 -
Trre11g01610 532 SUPERFAMILY Nucleic acid-binding proteins 131 257 IPR012340 -
Trre11g01610 532 Gene3D - 282 432 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01610 Trre-Chr11 15717391 15719821 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01610 21 383 Core DNA Replication Machinery Family AT4G19130 22.977 4.74e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01610 - - tpra:123904946 606.675