Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01604 ATGAAAAAGAATTCTGAGCAGAATCGTTTTGGGGCTGTATTCAACAAGCTGTTGAACCAGCTTGGGGAACCTGTTGACTTTGAACTTCCAGACTGGGTTAAGATCAGAACAACACAGTACACCCATATTAAGCGCAATATATATCTCACCAAGAAGAACAAAAGAAAATTTGATCATGGCATATTCTGTTCCTGCGAACCATCATCTGAATCTACTGGTGTATGTGGCAGAGATTGCCACTGTGGGATGCTTCTGTCTAGCTGTTCTTCAGCCTGCAAATGTGGGATCTCGTGTCTCAACAAAGCTTTTCAGAATCGTCCTGTGAAAAAGATGAAGTTGGTTCTGACTGAGAAATGTGGTTCTGGAATTGTGGCCGATGAAGATATCAAGCTTGGGGAGTTTGTCATTGAATATGTTGGAGAAGTCATCGATGATAAAACATGCGAACAGAGGCTGTGGAATATGAAAGATCGTGGGGAGACAAACTTTTACTTATGTGAAATCACTCGAGATATGGTGATAGATGCAACATATAAGGGAAACAAATCGAGATATATCAATCATAGCTGCTGCCCGAATACTGAGATGCAAAAATGGATAATAGACGGTGAAACCAGAATTGGCATATTTGCAACTCGTGACATACGGAAGGGCGAGCATCTGACTTATGACTACCAGTTTGTTCAATTTGGTGCAGATCAAGATTGCCACTGTGGCGCTGTTCAGTGTAGGCGTAAACTGGGTGCGCGCCCTACCAAGCCTAAAGTGTCTTCAGATGCTGCATTAAAATTAGTTTCATATCAGGTTTGTCAGAATGGAGGCATGCAAGGTGTGCATATTGGAAGTTCTCGGATTTTTGATCAACCAAAATGCTTACACAATTGCGTTGATGAAGTAATCATGATAAAACAACTTGGAAATGTGAGATTTGGGATTATTAAATGGTTTGATGAATATTCCCGAAAACACAAGATCATGTTTGAGGATGGTTGTTCTGAAATTCGTGACATGTCAAAAGAAGATTGGGAACTAGTGAGATTGTGA 1044 0.4071 MKKNSEQNRFGAVFNKLLNQLGEPVDFELPDWVKIRTTQYTHIKRNIYLTKKNKRKFDHGIFCSCEPSSESTGVCGRDCHCGMLLSSCSSACKCGISCLNKAFQNRPVKKMKLVLTEKCGSGIVADEDIKLGEFVIEYVGEVIDDKTCEQRLWNMKDRGETNFYLCEITRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIRKGEHLTYDYQFVQFGADQDCHCGAVQCRRKLGARPTKPKVSSDAALKLVSYQVCQNGGMQGVHIGSSRIFDQPKCLHNCVDEVIMIKQLGNVRFGIIKWFDEYSRKHKIMFEDGCSEIRDMSKEDWELVRL 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01604 347 CDD SET_ASHR3-like 110 248 - -
Trre11g01604 347 Gene3D SET domain 28 264 IPR046341 -
Trre11g01604 347 ProSiteProfiles AWS domain profile. 58 107 IPR006560 GO:0005634|GO:0042054
Trre11g01604 347 ProSiteProfiles SET domain profile. 109 226 IPR001214 GO:0005515
Trre11g01604 347 SMART set_7 109 232 IPR001214 GO:0005515
Trre11g01604 347 Pfam SET domain 120 225 IPR001214 GO:0005515
Trre11g01604 347 ProSiteProfiles Post-SET domain profile. 232 248 IPR003616 -
Trre11g01604 347 SMART shorttest3 58 108 IPR006560 GO:0005634|GO:0042054
Trre11g01604 347 SMART PostSET_3 232 248 IPR003616 -
Trre11g01604 347 FunFam Histone-lysine N-methyltransferase 27 264 - -
Trre11g01604 347 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 34 277 IPR025787 -
Trre11g01604 347 SUPERFAMILY SET domain 36 244 IPR046341 -
Trre11g01604 347 PANTHER SET DOMAIN PROTEINS 24 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01604 Trre-Chr11 15673100 15681141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01604 82 244 C2H2 Transcription Factor Family AT2G23740 34.973 3.44e-23 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre11g01604 SET 3.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01604 - - gmx:100808183 606.675