Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01598 ATGATTTGTGGGGACAAAATATGTGCATGTGAAGATGTTGTTGAAAAAGAAATCAATGAAAGCCTGCAAGCTCCTTTAAATGGTCAGTTCAATGAAGTTAATCCTGTTAACAATGTAACCCCATTTTGGAAAGCAGGATTCTTTAGTAAGATTTCATTTTGGTGGTTGAACCCTTTGATGAAAATGGGTTATGAGAAAACACTTCAAGATGAGGATATCCCGATGTTAAGAGAGAGCGACCGAGCAGAAAGTTGTTATTTGTCATTTGTAGAACAGTTAAACAAGAAAAACCAAAATGAACCGTCATTACATTCGTCAATATTATGGACAATAATTCAGTGCCACAAGACAGATATTTTGATAACAGGATTCTTGGCTTTTCTCAAGGTACTCACTTTATCTTCTGGTCCTCTACTTCTGAATGAATTTATATTGGTTGCCGAAGGTAATAAAAGTTTCGAATATGAAGGTTATGTATTGGTTATTTCAATTTTCTTTATAAAGATCATAGAATCCTTATCGCAAAGGCAATGGTATGTTCGAAGTAGACTCGTTGGAATGAAGGTTAGATCACTACTTACTGTGGCCATTTACAAAAAAATATTAAGGCTATCAAATTCTGCTAGATTGATTCACTCTAACGGTGAGATAATGAATTATATGATCGTAGATGCATATAGAATCGGAGAATTTCCATTCTGGTTTCATCAGACTTGGACAACAAGCCTCCAATTGTGTATCGTATTAATGATTCTTTTTCGTACAGTCGGACTAGCCACACTAGCACCATTATTGGTGATAGTTCTCACTGTGCTTTGTAATGCTCCGGTAGCAAAGTTACAACATAAGTTTCAAAGCCAACTTATGGTAGCACAAGATAAAAGATTAAAGGCTTGTTCGGAGGCTCTTGTGAATATGAAAGTGTTGAAGCTATATGCATGGGAAACTCATTTTAAAAATGTTGTAGATAACTTAAGAAATGTGGAACTCAAATTGTTATCGGCGGTGCAACTAAGAAGAACATACCATATATTTTTCTTTTCGACCACACTGATGTTGGCGTCAACTACGTTTTTTTTGGTATGTTATTTCTTAAATGTTCCTTTGAATGCAAGTAATGTTTTCACTTTTGTGGCAACTTTGCGCCTTATTCAAGAACCAATTTCAAGCATCCCAGATGTTATTGCCGCGATCATTCAGGCAAAAGTTGCCTTTTCTCGGATTGTTACTTTCCTTCAGGCACCCGAATTGCAGAGTGAAAATTTCAAGAAAAAGTGTTTTAACGAAAACATCAAAGACTTAATTTCAATAAAATGTGCCGACTTTTCATGGGAAGATAATGAATCAAAGCCAACATTAAGGAACATAAATTTAGTTGTTAGACAAGGACAAAAGGTGGCTATTTGTGGAGAGGTTGGCTCAGGAAAATCAACCATCTTAGCAGCAATTCTTGGTGAAGTTTCTAAAACAAAAGGAACTATTGATGTTCATGGGAAGTTTGGATATGTTTCTCAAACAACATGGATTCAAACAGGCACAATACAGGAAAATATTTTGTTTGGATCAGAGTTGGAGGATGAAAGATACCAAGAAACACTTGAGAGGTCTTCATTGATAAAGGACCTAGAGTTGTTTCCCTATGGAGACCTAACTGAAATAGGTGAAAGAGGAGTTAATTTAAGTGGAGGTCAAAAGCAAAGAATTCAACTTGCTCGTGCACTTTATCAGAATGCTGATATATATCTATTGGATGATCCATTTAGTGCTGTTGATGCAAACACTGCAAAAAATTTGTTTAATGAATACATCATGGAAGGACTCAAAGAAAAAACTGTCTTACTTGTAACTCATCAAGTCGACTTCCTCCCAGCATTTGATTCTATTTTGTTGATATCTGATGGGGTGATCCAACAAGCTGGTCCATATCAAGAGCTATTAAGCTCAAGCCAAGAATTCTATGACCTTGTCAATGCTCACAAGGTAACTGCTGGTTCTAACAAATTTGCTGCAAACATTACTATTTCCACGAGACATTCAACATCGAGAAAGAATACTACGTCGGATCCTATGTTGAAGGAGTTTAAAACACCAAATGGAAATCAATTAATTCATCAAGAAGAGATGGAGAAAGGAGACACAAGATTGAAAGCTTATAAACAATATCTGAATCAGATGAAAGGCTATATATTATTCTTTATGGCTTCCCTTTGTTTCCTTATTTTTACTGTTTGTCAGATCTTACAAAACTCATGGATGGCTGCTAATGTTGACAATCCTCATGTCAGCACATTGCAATTGATTTTAGTTTATTTCTTTATTGGTCTTTTTTCAATACTTTTCTTGTTCATAAGATGTCAACTTGTAGTTACTTTGGGTCTTCAATCATCAAAAGTTTTATTTACACAGTTGATGAACTCCCTCTTCCATGCACCTATGTCATTTTATGACTCTACACCACTTGGAAGGGTCCTTAGTAGGGTCTCATCAGATCTGAGTATTATGGATCTTGACATTCCATTTAGCCTCAGTTTTGCTACGGCGGGAGCTATTGTTTTATATTCCAATCTTACAGTTTTGGGGGTTGTCACATGGCAAGTCTTGATTGTAGCTATACCAATGGTTTATGTAGCAATTCGCTTACAGAGATACTACTTTGCCTCAGCGAAAGAAGTAATGAGGTTGAATGGCACAACAAAATCTTATTTAGCCAATCATGTAGCAGAAACTATAGCTGGAGCTGTAACCATAAGGGCTTTTGAGGAGGAAGATCATTCTTTTAAGAAGAACTTTGATCTAATTGATATTAATGCTAGTGCTTTTTTTCATAGTTTTGCCTCAAACGAGTGGTTGATACAGCGTTTAGAAACAATTAGTGCAGTTGTTCTTGGCGCTGCAACACTTTGCCTTGTTATGCTCCCCCCCGAAACATTCCCCTCAGGAATTATTGGCATGGCTCTATCTTACGGCCTATCATTAAACGCTTCCTTAGTTTTTTCAATTCAAAATCAATGCACTCTCGCTAATTACATGATATCGGTAGAGAGGGTAAATCAATATATGCATATACAAAGTGAGGCAGAAGAAATAGTAGAAGATTATCGTCCTCCTTTGAATTGGCCAGTTGCAGGTGAAGTAGAAATAGATGACTTGAAGATACGATATAGACATGGAGGACCACTAGTACTTCATGGGATAACATGCACATTTAAAGCAGGTCACAAGATTGGTATTGTTGGAAGAACAGGTAGTGGGAAATCTACTCTTATTAGTGCTTTATTTCGTCTTGTGGAACCAGCAGGAGGAAGAGTTATAGTTGATGGTATAGACATCTCATCTATTGGCCTTCATGATTTGAGGTCACATATTGGGATTATACCTCAAGATCCTACCCTTTTCAATGGGACAATAAGATTTAACTTGGACCCTTTATCTCAATACACTGATCAAGAGATGTGGGAGGTTCTTGGAAAGTGTCAATTGCGAGAAGTTGTCCAAGGGAAACAAGAAGGTTTAAACTCCTCCGTTGTTGAAGATGGATCAAACTGGAGCATGGGACAAAGGCAATTATTCTGTTTGGGGCGTGCTATATTGAGGAAAAGTAAAATATTGGTATTGGACGAAGCAACTGCTTCAATCGATAATTCTACTGATTTGATTGTTCAGAAAATCATAAGGGCTGAGTTTTCAGATTGTACTGTGATCACAGTAGCACACAGGATACCAACTGTGATGGATTGCACTATGGTTCTTGCTATAAGTGATGGAAAATTGGCTGAGTATGACGAGCCAGTGAATTTGATGAAGACAGAAGAATCATTGTTTAGGAAGCTTGTCGAGGAATATTGGTCTCATTTTCAGTCTGCAGAATCACATTGA 3876 0.3687 MICGDKICACEDVVEKEINESLQAPLNGQFNEVNPVNNVTPFWKAGFFSKISFWWLNPLMKMGYEKTLQDEDIPMLRESDRAESCYLSFVEQLNKKNQNEPSLHSSILWTIIQCHKTDILITGFLAFLKVLTLSSGPLLLNEFILVAEGNKSFEYEGYVLVISIFFIKIIESLSQRQWYVRSRLVGMKVRSLLTVAIYKKILRLSNSARLIHSNGEIMNYMIVDAYRIGEFPFWFHQTWTTSLQLCIVLMILFRTVGLATLAPLLVIVLTVLCNAPVAKLQHKFQSQLMVAQDKRLKACSEALVNMKVLKLYAWETHFKNVVDNLRNVELKLLSAVQLRRTYHIFFFSTTLMLASTTFFLVCYFLNVPLNASNVFTFVATLRLIQEPISSIPDVIAAIIQAKVAFSRIVTFLQAPELQSENFKKKCFNENIKDLISIKCADFSWEDNESKPTLRNINLVVRQGQKVAICGEVGSGKSTILAAILGEVSKTKGTIDVHGKFGYVSQTTWIQTGTIQENILFGSELEDERYQETLERSSLIKDLELFPYGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDANTAKNLFNEYIMEGLKEKTVLLVTHQVDFLPAFDSILLISDGVIQQAGPYQELLSSSQEFYDLVNAHKVTAGSNKFAANITISTRHSTSRKNTTSDPMLKEFKTPNGNQLIHQEEMEKGDTRLKAYKQYLNQMKGYILFFMASLCFLIFTVCQILQNSWMAANVDNPHVSTLQLILVYFFIGLFSILFLFIRCQLVVTLGLQSSKVLFTQLMNSLFHAPMSFYDSTPLGRVLSRVSSDLSIMDLDIPFSLSFATAGAIVLYSNLTVLGVVTWQVLIVAIPMVYVAIRLQRYYFASAKEVMRLNGTTKSYLANHVAETIAGAVTIRAFEEEDHSFKKNFDLIDINASAFFHSFASNEWLIQRLETISAVVLGAATLCLVMLPPETFPSGIIGMALSYGLSLNASLVFSIQNQCTLANYMISVERVNQYMHIQSEAEEIVEDYRPPLNWPVAGEVEIDDLKIRYRHGGPLVLHGITCTFKAGHKIGIVGRTGSGKSTLISALFRLVEPAGGRVIVDGIDISSIGLHDLRSHIGIIPQDPTLFNGTIRFNLDPLSQYTDQEMWEVLGKCQLREVVQGKQEGLNSSVVEDGSNWSMGQRQLFCLGRAILRKSKILVLDEATASIDNSTDLIVQKIIRAEFSDCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPVNLMKTEESLFRKLVEEYWSHFQSAESH 1291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01598 1291 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 732 1008 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre11g01598 1291 SUPERFAMILY ABC transporter transmembrane region 728 1027 IPR036640 GO:0005524|GO:0016020
Trre11g01598 1291 CDD ABCC_MRP_domain1 435 634 - -
Trre11g01598 1291 Gene3D - 1028 1280 IPR027417 -
Trre11g01598 1291 Pfam ABC transporter 1062 1210 IPR003439 GO:0005524
Trre11g01598 1291 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1036 1278 IPR027417 -
Trre11g01598 1291 CDD ABC_6TM_ABCC_D2 731 1020 IPR044726 GO:0140359
Trre11g01598 1291 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 437 658 IPR003439 GO:0005524
Trre11g01598 1291 CDD ABC_6TM_ABCC_D1 121 408 IPR044746 GO:0140359
Trre11g01598 1291 ProSitePatterns ABC transporters family signature. 560 574 IPR017871 GO:0005524|GO:0016887
Trre11g01598 1291 FunFam ABC transporter C family member 5 694 1026 - -
Trre11g01598 1291 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 120 400 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre11g01598 1291 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 44 1279 - -
Trre11g01598 1291 Pfam ABC transporter transmembrane region 120 386 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre11g01598 1291 Pfam ABC transporter transmembrane region 733 968 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre11g01598 1291 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 430 658 IPR027417 -
Trre11g01598 1291 Gene3D - 433 665 IPR027417 -
Trre11g01598 1291 FunFam ABC transporter C family member 3 1028 1280 - -
Trre11g01598 1291 FunFam ABC transporter C family member 5 423 666 - -
Trre11g01598 1291 Pfam ABC transporter 453 587 IPR003439 GO:0005524
Trre11g01598 1291 Gene3D ABC transporter type 1, transmembrane domain 693 1027 IPR036640 GO:0005524|GO:0016020
Trre11g01598 1291 Gene3D ABC transporter type 1, transmembrane domain 90 417 IPR036640 GO:0005524|GO:0016020
Trre11g01598 1291 FunFam ABC transporter C family member 10 103 416 - -
Trre11g01598 1291 SMART AAA_5 462 635 IPR003593 GO:0016887
Trre11g01598 1291 SMART AAA_5 1071 1263 IPR003593 GO:0016887
Trre11g01598 1291 SUPERFAMILY ABC transporter transmembrane region 108 408 IPR036640 GO:0005524|GO:0016020
Trre11g01598 1291 CDD ABCC_MRP_domain2 1043 1263 - -
Trre11g01598 1291 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1045 1279 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01598 Trre-Chr11 15623774 15630463 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01598 256 691 Calmodulin-binding Proteins AT2G36910 25.325 5.66e-28 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01598 K05666 - gmx:100787314 1964.5