Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01597 ATGAAGATAGATGATATTTGGAGCATGATTTGTGGGGACAAAATATGTGCATGTGAAGATGTTGTTGAAAAAGAAATCAATGAAAGCCTGCAAGCTCCTTTAAATGGTCAGTTCAATGAAGTTAATCCTGTTAACAATGTAACCCCATTTTGGAAAGCAGGATTCTTTAGTAAGATTTCATTTTGGTGGTTGAACCCTTTGATGAAAATGGGTTATGAGAAAACACTTCAAGATGAGGATATCCCGATGTTAAGAGAGAGCGACCGAGCAGAAAGTTGTTATTTGTCATTTGTAGAACAGTTAAACAAGAAAAACCAAAATGAACCGTCATTACATTCGTCAATATTATGGACAATAATTCAGTGCCACAAGACAGATATTTTGATAACAGGATTCTTGGCTTTTCTCAAGGTACTCACTTTATCTTCTGGTCCTCTACTTCTGAATGAATTTATATTGGTTGCCGAAGGTAATAAAAGTTTCGAATATGAAGGTTATGTATTGGTTATTTCAATTTTCTTTATAAAGATCATAGAATCCTTATCGCAAAGGCAATGGTATGTTCGAAGTAGACTCGTTGGAATGAAGGTTAGATCACTACTTACTGTGGCCATTTACAAAAAAATATTAAGGCTATCAAATTCTGCTAGATTGATTCACTCTAACGGTGAGATAATGAATTATATGATCGTAGATGCATATAGAATCGGAGAATTTCCATTCTGGTTTCATCAGACTTGGACAACAAGCCTCCAATTGTGTATCGTATTAATGATTCTTTTTCGTACAGTCGGACTAGCCACACTAGCACCATTATTGGTGATAGTTCTCACTGTGCTTTGTAATGCTCCGGTAGCAAAGTTACAACATAAGTTTCAAAGCCAACTTATGGTAGCACAAGATAAAAGATTAAAGGCTTGTTCGGAGGCTCTTGTGAATATGAAAGTGTTGAAGCTATATGCATGGGAAACTCATTTTAAAAATGTTGTAGATAACTTAAGAAATGTGGAACTCAAATTGTTATCGGCGGTGCAACTAAGAAGAACATACCATATATTTTTCTTTTCGACCACACTGATGTTGGCGTCAACTACGTTTTTTTTGGTATGTTATTTCTTAAATGTTCCTTTGAATGCAAGTAATGTTTTCACTTTTGTGGCAACTTTGCGCCTTATTCAAGAACCAATTTCAAGCATCCCAGATGTTATTGCCGCGATCATTCAGGCAAAAGTTGCCTTTTCTCGGATTGTTACTTTCCTTCAGGCACCCGAATTGCAGAGTGAAAATTTCAAGAAAAAGTGTTTTAACGAAAACATCAAAGACTTAATTTCAATAAAATGTGCCGACTTTTCATGGGAAGATAATGAATCAAAGCCAACATTAAGGAACATAAATTTAGTTGTTAGACAAGGACAAAAGGTGGCTATTTGTGGAGAGGTTGGCTCAGGAAAATCAACCATCTTAGCAGCAATTCTTGGTGAAGTTTCTAAAACAAAAGGAACTATTGATGTTCATGGGAAGTTTGGATATGTTTCTCAAACAACATGGATTCAAACAGGCACAATACAGGAAAATATTTTGTTTGGATCAGAGTTGGAGGATGAAAGATACCAAGAAACACTTGAGAGGTCTTCATTGATAAAGGACCTAGAGTTGTTTCCCTATGGAGACCTAACTGAAATAGGTGAAAGAGGAGTTAATTTAAGTGGAGGTCAAAAGCAAAGAATTCAACTTGCTCGTGCACTTTATCAGAATGCTGATATATATCTATTGGATGATCCATTTAGTGCTGTTGATGCAAACACTGCAAAAAATTTGTTTAATGAATACATCATGGAAGGACTCAAAGAAAAAACTGTCTTACTTGTAACTCATCAAGTCGACTTCCTCCCAGCATTTGATTCTATTTTGTTGATATCTGATGGGGTGATCCAACAAGCTGGTCCATATCAAGAGCTATTAAGCTCAAGCCAAGAATTCTATGACCTTGTCAATGCTCACAAGGTAACTGCTGGTTCTAACAAATTTGCTGCAAACATTACTATTTCCACGAGACATTCAACATCGAGAAAGAATACTACGTCGGATCCTATGTTGAAGGAGTTTAAAACACCAAATGGAAATCAATTAATTCATCAAGAAGAGATGGAGAAAGGAGACACAAGATTGAAAGCTTATAAACAATATCTGAATCAGATGAAAGGCTATATATTATTCTTTATGGCTTCCCTTTGTTTCCTTATTTTTACTGTTTGTCAGATCTTACAAAACTCATGGATGGCTGCTAATGTTGACAATCCTCATGTCAGCACATTGCAATTGATTTTAGTTTATTTCTTTATTGGTCTTTTTTCAATACTTTTCTTGTTCATAAGATGTCAACTTGTAGTTACTTTGGGTCTTCAATCATCAAAAGTTTTATTTACACAGTTGATGAACTCCCTCTTCCATGCACCTATGTCATTTTATGACTCTACACCACTTGGAAGGGTCCTTAGTAGGGTCTCATCAGATCTGAGTATTATGGATCTTGACATTCCATTTAGCCTCAGTTTTGCTACGGCGGGAGCTATTGTTTTATATTCCAATCTTACAGTTTTGGGGGTTGTCACATGGCAAGTCTTGATTGTAGCTATACCAATGGTTTATGTAGCAATTCGCTTACAGAGATACTACTTTGCCTCAGCGAAAGAAGTAATGAGGTTGAATGGCACAACAAAATCTTATTTAGCCAATCATGTAGCAGAAACTATAGCTGGAGCTGTAACCATAAGGGCTTTTGAGGAGGAAGATCATTCTTTTAAGAAGAACTTTGATCTAATTGATATTAATGCTAGTGCTTTTTTTCATAGTTTTGCCTCAAACGAGTGGTTGATACAGCGTTTAGAAACAATTAGTGCAGTTGTTCTTGGCGCTGCAACACTTTGCCTTGTTATGCTCCCCCCCGAAACATTCCCCTCAGGAATTATTGGCATGGCTCTATCTTACGGCCTATCATTAAACGCTTCCTTAGTTTTTTCAATTCAAAATCAATGCACTCTCGCTAATTACATGATATCGGTAGAGAGGGTAAATCAATATATGCATATACAAAGTGAGGCAGAAGAAATAGTAGAAGATTATCGTCCTCCTTTGAATTGGCCAGTTGCAGGTGAAGTAGAAATAGATGACTTGAAGATACGATATAGACATGGAGGACCACTAGTACTTCATGGGATAACATGCACATTTAAAGCAGGTCACAAGATTGGTATTGTTGGAAGAACAGGTAGTGGGAAATCTACTCTTATTAGTGCTTTATTTCGTCTTGTGGAACCAGCAGGAGGAAGAGTTATAGTTGATGGTATAGACATCTCATCTATTGGCCTTCATGATTTGAGGTCACATATTGGGATTATACCTCAAGATCCTACCCTTTTCAATGGGACAATAAGATTTAACTTGGACCCTTTATCTCAATACACTGATCAAGAGATGTGGGAGGTTCTTGGAAAGTGTCAATTGCGAGAAGTTGTCCAAGGGAAACAAGAAGGTTTAAACTCCTCCGTTGTTGAAGATGGATCAAACTGGAGCATGGGACAAAGGCAATTATTCTGTTTGGGGCGTGCTATATTGAGGAAAAGTAAAATATTGGTATTGGACGAAGCAACTGCTTCAATCGATAATTCTACTGATTTGATTGTTCAGAAAATCATAAGGGCTGAGTTTTCAGATTGTACTGTGATCACAGTAGCACACAGGATACCAACTGTGATGGATTGCACTATGGTTCTTGCTATAAGTGATGGAAAATTGGCTGAGTATGACGAGCCAGTGAATTTGATGAAGACAGAAGAATCATTGTTTAGGAAGCTTGTCGAGGAATATTGGTCTCATTTTCAGTCTGCAGAATCACATTGA 3900 0.3685 MKIDDIWSMICGDKICACEDVVEKEINESLQAPLNGQFNEVNPVNNVTPFWKAGFFSKISFWWLNPLMKMGYEKTLQDEDIPMLRESDRAESCYLSFVEQLNKKNQNEPSLHSSILWTIIQCHKTDILITGFLAFLKVLTLSSGPLLLNEFILVAEGNKSFEYEGYVLVISIFFIKIIESLSQRQWYVRSRLVGMKVRSLLTVAIYKKILRLSNSARLIHSNGEIMNYMIVDAYRIGEFPFWFHQTWTTSLQLCIVLMILFRTVGLATLAPLLVIVLTVLCNAPVAKLQHKFQSQLMVAQDKRLKACSEALVNMKVLKLYAWETHFKNVVDNLRNVELKLLSAVQLRRTYHIFFFSTTLMLASTTFFLVCYFLNVPLNASNVFTFVATLRLIQEPISSIPDVIAAIIQAKVAFSRIVTFLQAPELQSENFKKKCFNENIKDLISIKCADFSWEDNESKPTLRNINLVVRQGQKVAICGEVGSGKSTILAAILGEVSKTKGTIDVHGKFGYVSQTTWIQTGTIQENILFGSELEDERYQETLERSSLIKDLELFPYGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDANTAKNLFNEYIMEGLKEKTVLLVTHQVDFLPAFDSILLISDGVIQQAGPYQELLSSSQEFYDLVNAHKVTAGSNKFAANITISTRHSTSRKNTTSDPMLKEFKTPNGNQLIHQEEMEKGDTRLKAYKQYLNQMKGYILFFMASLCFLIFTVCQILQNSWMAANVDNPHVSTLQLILVYFFIGLFSILFLFIRCQLVVTLGLQSSKVLFTQLMNSLFHAPMSFYDSTPLGRVLSRVSSDLSIMDLDIPFSLSFATAGAIVLYSNLTVLGVVTWQVLIVAIPMVYVAIRLQRYYFASAKEVMRLNGTTKSYLANHVAETIAGAVTIRAFEEEDHSFKKNFDLIDINASAFFHSFASNEWLIQRLETISAVVLGAATLCLVMLPPETFPSGIIGMALSYGLSLNASLVFSIQNQCTLANYMISVERVNQYMHIQSEAEEIVEDYRPPLNWPVAGEVEIDDLKIRYRHGGPLVLHGITCTFKAGHKIGIVGRTGSGKSTLISALFRLVEPAGGRVIVDGIDISSIGLHDLRSHIGIIPQDPTLFNGTIRFNLDPLSQYTDQEMWEVLGKCQLREVVQGKQEGLNSSVVEDGSNWSMGQRQLFCLGRAILRKSKILVLDEATASIDNSTDLIVQKIIRAEFSDCTVITVAHRIPTVMDCTMVLAISDGKLAEYDEPVNLMKTEESLFRKLVEEYWSHFQSAESH 1299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01597 1299 FunFam ABC transporter C family member 5 702 1034 - -
Trre11g01597 1299 SUPERFAMILY ABC transporter transmembrane region 736 1035 IPR036640 GO:0005524|GO:0016020
Trre11g01597 1299 CDD ABCC_MRP_domain1 443 642 - -
Trre11g01597 1299 CDD ABC_6TM_ABCC_D2 739 1028 IPR044726 GO:0140359
Trre11g01597 1299 SUPERFAMILY ABC transporter transmembrane region 116 416 IPR036640 GO:0005524|GO:0016020
Trre11g01597 1299 CDD ABC_6TM_ABCC_D1 129 416 IPR044746 GO:0140359
Trre11g01597 1299 Pfam ABC transporter 461 595 IPR003439 GO:0005524
Trre11g01597 1299 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 740 1016 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre11g01597 1299 SMART AAA_5 1079 1271 IPR003593 GO:0016887
Trre11g01597 1299 SMART AAA_5 470 643 IPR003593 GO:0016887
Trre11g01597 1299 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 52 1287 - -
Trre11g01597 1299 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 438 666 IPR027417 -
Trre11g01597 1299 Gene3D - 441 673 IPR027417 -
Trre11g01597 1299 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 445 666 IPR003439 GO:0005524
Trre11g01597 1299 Pfam ABC transporter transmembrane region 741 976 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre11g01597 1299 Pfam ABC transporter transmembrane region 128 394 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre11g01597 1299 FunFam ABC transporter C family member 3 1036 1288 - -
Trre11g01597 1299 Gene3D ABC transporter type 1, transmembrane domain 98 425 IPR036640 GO:0005524|GO:0016020
Trre11g01597 1299 Gene3D ABC transporter type 1, transmembrane domain 701 1035 IPR036640 GO:0005524|GO:0016020
Trre11g01597 1299 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 128 408 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Trre11g01597 1299 Gene3D - 1036 1288 IPR027417 -
Trre11g01597 1299 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1053 1287 IPR003439 GO:0005524
Trre11g01597 1299 Pfam ABC transporter 1070 1218 IPR003439 GO:0005524
Trre11g01597 1299 CDD ABCC_MRP_domain2 1051 1271 - -
Trre11g01597 1299 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1044 1286 IPR027417 -
Trre11g01597 1299 ProSitePatterns ABC transporters family signature. 568 582 IPR017871 GO:0005524|GO:0016887
Trre11g01597 1299 FunFam ABC transporter C family member 5 431 674 - -
Trre11g01597 1299 FunFam ABC transporter C family member 10 111 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01597 Trre-Chr11 15623750 15630463 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01597 264 699 Calmodulin-binding Proteins AT2G36910 25.325 5.30e-28 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01597 K05666 - gmx:100787314 1964.5