Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01586 ATGGAGTGCAATAAGGACGAGGCTACCAGAGCTAAAGAAGTTGCTGAGAGGAAGTTCATTGCAAAGGAACTATCGGGAGCAAAGAAGTTTGCTTTGAAAGCCGAAAAGTTATTTCCTTCCCTTGAGGGTATTCCTCAAATGATAGCAAAACTTGACGTGTATATTTCTGCTGAGAATAAAGTAAAAGGAGAAACAGATTGGTATGGTATACTTGGTGTGGACCCGCATGCCGACGATGATACGGTTAAGAAACAATTTAGGAAGCTAGCTCTCATGCTTCACCCAGACAAGAACAAGTCCGTCGGAGCTGATGGGGCCTTTAAACATGTTTCAGAGGCGTGGAGTATACTGTCTGATAAGGAAAGAAGGGCAGCTTATGATGAAAAGATTAATGTAAAAGCACAAAAAGGCTCAACCATTTTTGGCGGTTCATCAGCAAAAGCGGCGGCAAATGGGGCGAACAATGGCAAAAAGAAACCCCCTTCAGGTTCAAGGACTCGGAAAAGTCCTGCCAAAGAAGAAACACCATCTTCCTCCGATAAACCCCCTTCAGGTTCAAGGACTCGGAAAAGTCCTGCTAAAGAAGAAACATCATCTTCCTCCAGCAAACCCCAATACACATTTTGGACTACTTGCCAACATTGCAAAATGCAATACGAGTATGTCCGATTGTATCTTAACCTGAAGCTCGTTTGTCCTAGATGCCGTGAAGCATTTTTGGCGTTAGAAACTAATCCGCCTGCTGCAAGTGGTATCAGACCTTGGGATACATTGAATTTTATGCAAAAGCCTGATCACCAAGGACCTCATAAAAGCAAATCTAATGCTGGAAAGAACAACATGGCAGCTCCATTCTCGAATTCTGGCGTTTCTAATGTGGCTCAAGATGCAAATGTGGTTCAGAAGCCATATCGTAAGGTGAAGCGAGATCGTGAGGAGGCACAAGCCGCTACAAAAAAGGAAGATGCTTTAAGAAGGAAGAGGACAAGGGGGGGCATGGAGGGAAATGGAGCGTGCAGTGGTATCAAGAACTTCAACTGTACTAGAGATCTCACCCCAATTGAACTTAAGAATCTTCTTGTTGAGAAAGCTAGAAAAGAAATTAGCAAGAAACTCAGTGAGTTCCAGTCAAATACTGCTGCTAAATCTGTGGAGAAAAAGAGTGGAGATTGCTTCCAGAAAGAAGACCGGAAAGGAAAATCTTCAGCTAGAAACTCTGAGTGA 1224 0.4346 MECNKDEATRAKEVAERKFIAKELSGAKKFALKAEKLFPSLEGIPQMIAKLDVYISAENKVKGETDWYGILGVDPHADDDTVKKQFRKLALMLHPDKNKSVGADGAFKHVSEAWSILSDKERRAAYDEKINVKAQKGSTIFGGSSAKAAANGANNGKKKPPSGSRTRKSPAKEETPSSSDKPPSGSRTRKSPAKEETSSSSSKPQYTFWTTCQHCKMQYEYVRLYLNLKLVCPRCREAFLALETNPPAASGIRPWDTLNFMQKPDHQGPHKSKSNAGKNNMAAPFSNSGVSNVAQDANVVQKPYRKVKRDREEAQAATKKEDALRRKRTRGGMEGNGACSGIKNFNCTRDLTPIELKNLLVEKARKEISKKLSEFQSNTAAKSVEKKSGDCFQKEDRKGKSSARNSE 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01586 407 MobiDBLite consensus disorder prediction 143 204 - -
Trre11g01586 407 SMART dnaj_3 65 122 IPR001623 -
Trre11g01586 407 Coils Coil 307 327 - -
Trre11g01586 407 Gene3D DnaJ domain 63 202 IPR036869 -
Trre11g01586 407 PRINTS DnaJ domain signature 86 101 IPR001623 -
Trre11g01586 407 PRINTS DnaJ domain signature 102 122 IPR001623 -
Trre11g01586 407 PRINTS DnaJ domain signature 68 86 IPR001623 -
Trre11g01586 407 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Trre11g01586 407 MobiDBLite consensus disorder prediction 387 407 - -
Trre11g01586 407 MobiDBLite consensus disorder prediction 303 335 - -
Trre11g01586 407 Pfam DnaJ domain 66 127 IPR001623 -
Trre11g01586 407 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Trre11g01586 407 CDD DnaJ 66 119 IPR001623 -
Trre11g01586 407 PANTHER BNAC03G44070D PROTEIN 1 400 - -
Trre11g01586 407 MobiDBLite consensus disorder prediction 372 407 - -
Trre11g01586 407 MobiDBLite consensus disorder prediction 303 332 - -
Trre11g01586 407 SUPERFAMILY Chaperone J-domain 58 126 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01586 Trre-Chr11 15473446 15474669 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01586 4 136 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 39.568 1.95e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01586 - - tpra:123911521 473.781