Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01576 ATGGCTTCCATTGCTGCTTCAACTGCAGCTGCTTCACTTGGAATGTCAGAAATGCTTGGAAGTCCAATTAAATTCAGTGGTGCAACAAGAACTGTTCCTTCTTCTTCAACTTCTTATACCTTCAAAACTGTTGCTCTTTTCTCTAAGAAGAAACCAGCACCACCACCAAAGAAAGCTGTAGTTACTCCGGCTAGCGAGGAACTCGCCAAGTGGTATGGTCCGGACAGAAGGATCTTCTTGCCAGATGGTCTCTTGGACAGGTCTGAGATCCCTGAGTACTTGACTGGAGAAGTCCCTGGAGACTATGGTTATGATCCTTTTGGCCTAAGCAAGAAGCCCGAAGACTTCGCCAAATATCAAGGATATGAGTTGATTCATGCTAGATGGGCAATGCTTGGTGCTGCTGGATTCATCATTCCTGAGGCCTTCAACAAATATGGCGCCAATTGTGGTCCCGAGGCTGTTTGGTTCAAGACAGGAGCTCTCCTTCTCGACGGTGGTACGTTGAACTACTTTGGAAAAAGCATCCCAATCAATCTTGTTGTTGCTGTCATTGCTGAGGTTGTTCTTTTGGGAGGTGCAGAGTACTACAGAATTACCAATGGACTGGATTTGGAAGACAAGCTTCATCCAGGAGGTCCATTTGATCCATTAGGTCTAGCAAATGATCCAGACCAAGCTGCAATTCTAAAAGTGAAAGAAATCAAGAATGGTAGACTTGCTATGTTTTCCATGCTTGGTTTCTTCATTCAAGCTTATGTGACAGGAGAAGGTCCTGTTGAGAATTTTGCAAAACATCTCAGTGACCCTTTTGGCAACAATTTGCTCACTGTTATTGCTGGAAATGTTGAAAGGGCTCCAACTCTGTGA 870 0.4448 MASIAASTAAASLGMSEMLGSPIKFSGATRTVPSSSTSYTFKTVALFSKKKPAPPPKKAVVTPASEELAKWYGPDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQGYELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKSIPINLVVAVIAEVVLLGGAEYYRITNGLDLEDKLHPGGPFDPLGLANDPDQAAILKVKEIKNGRLAMFSMLGFFIQAYVTGEGPVENFAKHLSDPFGNNLLTVIAGNVERAPTL 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01576 289 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 33 279 IPR001344 GO:0009765|GO:0016020
Trre11g01576 289 FunFam Chlorophyll a-b binding protein, chloroplastic 78 289 - -
Trre11g01576 289 SUPERFAMILY Chlorophyll a-b binding protein 71 279 - -
Trre11g01576 289 Pfam Chlorophyll A-B binding protein 91 252 IPR022796 -
Trre11g01576 289 Gene3D Chlorophyll a/b binding protein domain 78 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01576 Trre-Chr11 15413170 15416354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01576 11 289 Chloroplast and Mitochondria Gene Families AT4G10340 83.571 7.98e-155 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01576 K08916 - gmx:100806585 502.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01576 11 15413170 15416354 Trre11g01576 11 15413170 15416354 ECH