Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01548 ATGCATATTGAATTAGGGTCTGATCTTGGAATTTCAAGCTACCGTGGTTCCCATTTAACACCTCGGAACTTTACAGTGAATTCCGGCGAGGATATCTCCCAAAAAATTTGCTTTCTTGCACTGCAATTCCATGCGATAGTCATTAACTCTGGACATGGCACTATTTCAAGCTTCACAATTCGTAAGTCGGGTTCTCCTGACGAGACTAATAAATATGAGGGAATTTTTGAACTGCTTTCTTTGACGGGCTCGTTTTTGCCAAGTAATACTGGTTTTTATAAAAGACGTGGTTCGGTGGCTGTCTCTTTGGCTTTTCGAAATGGTCAAACTATTGGGGGTAAACTGGCTGGTCCACTGGTAGCTGCAGGTCCTGTGCATGTTATGGTATTCAGCTTTCGTCCTAATATGCCTCGCATGCTGCGGGAGCATAAGAAAGACACTGAGAAGCGAAAGAAAGGCAAGGAGATTGTCTAA 474 0.4325 MHIELGSDLGISSYRGSHLTPRNFTVNSGEDISQKICFLALQFHAIVINSGHGTISSFTIRKSGSPDETNKYEGIFELLSLTGSFLPSNTGFYKRRGSVAVSLAFRNGQTIGGKLAGPLVAAGPVHVMVFSFRPNMPRMLREHKKDTEKRKKGKEIV 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01548 157 CDD DUF296 24 132 IPR005175 -
Trre11g01548 157 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 16 145 IPR039605 GO:0003680
Trre11g01548 157 Pfam Plants and Prokaryotes Conserved (PCC) domain 24 132 IPR005175 -
Trre11g01548 157 ProSiteProfiles PPC domain profile profile. 16 157 IPR005175 -
Trre11g01548 157 SUPERFAMILY AF0104/ALDC/Ptd012-like 18 136 - -
Trre11g01548 157 Gene3D - 23 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01548 Trre-Chr11 15055258 15057628 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01548 19 132 AT-hook Motif Nuclear Localized (AHL) Family AT5G51590 50.862 9.01e-26 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01548 - - mtr:11438826 124.02