Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01547 ATGAACGTGTTCGTGGGAAATGTCCTCGATCTTGGAATTTCAAGCTACCGTGGTTCCCATTTAACACCTCGGAACTTTACAGTGAATTCCGGCGAGGATATCTCCCAAAAAATTTGCTTTCTTGCACTGCAATTCCATGCGATAGTCATTAACTCTGGACATGGCACTATTTCAAGCTTCACAATTCGTAAGTCGGGTTCTCCTGACGAGACTAATAAATATGAGGGAATTTTTGAACTGCTTTCTTTGACGGGCTCGTTTTTGCCAAGTAATACTGGTTTTTATAAAAGACGTGGTTCGGTGGCTGTCTCTTTGGCTTTTCGAAATGGTCAAACTATTGGGGGTAAACTGGCTGGTCCACTGGTAGCTGCAGGTCCTGTGCATGTTATGGTATTCAGCTTTCGTCCTAATATGCCTCGCATGCTGCGGGAGCATAAGAAAGACACTGAGAAGCGAAAGAAAGGCAAGGAGATTGTCTAA 480 0.4396 MNVFVGNVLDLGISSYRGSHLTPRNFTVNSGEDISQKICFLALQFHAIVINSGHGTISSFTIRKSGSPDETNKYEGIFELLSLTGSFLPSNTGFYKRRGSVAVSLAFRNGQTIGGKLAGPLVAAGPVHVMVFSFRPNMPRMLREHKKDTEKRKKGKEIV 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01547 159 CDD DUF296 26 134 IPR005175 -
Trre11g01547 159 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 18 147 IPR039605 GO:0003680
Trre11g01547 159 Gene3D - 25 154 - -
Trre11g01547 159 SUPERFAMILY AF0104/ALDC/Ptd012-like 20 138 - -
Trre11g01547 159 ProSiteProfiles PPC domain profile profile. 18 159 IPR005175 -
Trre11g01547 159 Pfam Plants and Prokaryotes Conserved (PCC) domain 26 134 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01547 Trre-Chr11 15055143 15057628 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01547 21 134 AT-hook Motif Nuclear Localized (AHL) Family AT5G51590 50.862 1.19e-25 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01547 - - mtr:11438826 124.02