Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01543 ATGGAAGAAAGAGGGATTTTTAAGGATAACGAGGCATCTCCAGCCAGTGCTGCGGCGGCGACGCCTGATAGTAAAAAGAGGGATAAGGCTGGGCAGTATGAATCGGGCAGTCAGGCAGTGCTGTCGTCTAAGCAGATTTTGTCAGGAACTCCATTCACTGAAGATTTTCCAGCCTCAAAAAGGGGTCGAGGGTTGTATAATTTTAACGATGATGGAATTTCAAGTTCCCGTGGTTCCCATTTAACACATTGGTTTACAGTGAATTCTGGCGAGGATATTTCCCAAAAAATTTGCTTTTTCGCACAACAATTCCCCGCGATATACATTATCTCTGGACATGGCACTATTTCAAGCGTCACACTTCGTCGGTCTGGTTCTCCTGACAAGACTTCTAAATATGAGGGAATTTTTGAACTGCTTTCTTTGGATGGTTTGTTTTTGCCAAGTAGTGCTGGCATTTATAAAAGACGTGGTTCGGTGGCTGTCTCTTTGGCTTTGCCAGATGGTCAAACTACTGCGGGTCAACTGGCTGGTCCACTGGTAGCTGCAGGTCCTGTGCAGGTTGTGGTTGCGAGTTTTCAACCAGAGCAGCAGAAACCAAAGAAACCAACTGCCGCTCCTATCATGTCACCGGCCGGCTTAAACTCTGCTTCTTTCAGCAATGGCCAAGGCTCTGGCAACTCATCATCATCTGCGGATGACGAGCATGTCTAA 714 0.4678 MEERGIFKDNEASPASAAAATPDSKKRDKAGQYESGSQAVLSSKQILSGTPFTEDFPASKRGRGLYNFNDDGISSSRGSHLTHWFTVNSGEDISQKICFFAQQFPAIYIISGHGTISSVTLRRSGSPDKTSKYEGIFELLSLDGLFLPSSAGIYKRRGSVAVSLALPDGQTTAGQLAGPLVAAGPVQVVVASFQPEQQKPKKPTAAPIMSPAGLNSASFSNGQGSGNSSSSADDEHV 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01543 237 MobiDBLite consensus disorder prediction 1 42 - -
Trre11g01543 237 CDD DUF296 82 193 IPR005175 -
Trre11g01543 237 SUPERFAMILY AF0104/ALDC/Ptd012-like 82 196 - -
Trre11g01543 237 ProSiteProfiles PPC domain profile profile. 77 214 IPR005175 -
Trre11g01543 237 MobiDBLite consensus disorder prediction 194 237 - -
Trre11g01543 237 Gene3D - 82 209 - -
Trre11g01543 237 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 15 219 IPR039605 GO:0003680
Trre11g01543 237 MobiDBLite consensus disorder prediction 211 231 - -
Trre11g01543 237 Pfam Plants and Prokaryotes Conserved (PCC) domain 82 194 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01543 Trre-Chr11 15026431 15030959 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01543 53 212 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 46.591 5.54e-33 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01543 - - mtr:11422923 163.31