Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01540 ATGGAAGAAAGAGAGATTTTTGGTTCTGGGCACGCTGTTAATGTTAACCAGGTCCCACAGAGCTTCAATTTAGCTCAGAATTCATTGAATTTTTCTGGGGCCACAGGAGAGTTACCGGCTCCGGCGAGTGCGCCGGCTGCGGCTGCCGGTGGTATGGAGGTAAAGAAGAAGAGGGGTAGGCCTAGAAAGTCTGAATCTGGAAGTAAACCGGCATTGTCGCCTATGCCGATTTCGGCCTCCATTCCATTGACTGGAGATTTCTCTGGTTGGAAAAGTGGTGGAGGGAAGCCTTTTGAATCAATCAAAAAGCCTTTGAAGTTAAATGATTTTGATGAAGATGATGGAACAGCTTCCCCCGGTTCCAATTTCAAAACTCACGTGCTTACAGTAAATTCCGGAGAGGATGTCTCGATGAAAATAATGTCTCTCTCTCAACAAGAATATCATACTATATCCATTCTCTCTGCGACTGGCACAATTTCAAATGTCACACTTCGCCAGTCAGATGCTAGTGGCGGTACTTCGACGTATGAGGGAGTTTTTGAGATTCTTTCGTTGTCCGGCTCATTTGTGCCCACTGAGAATGGATTGACTAAGAGCAGAGCTGGTAGGATGAGTGTCTCATTGGCGGGTCCAAATGGTCGTGTTTTTGGAGGTGCACTGGCTGGTTTGCTTGTAGCTGCTGGTTCTGTGCAGGTTGTGGTTGCGAGTTTTCAACCAGAGCAGCAGAAACCAAAGAAGCAAAGGACCGATTATACGGCACTACCTGCCCCTCCTACATCATCTCATATTAATAATCATGTTTCTGCTGAACAATTGAAGCCTATCATGTCACCAGCCGGCTTTAACTTTGCTTCTTTCGGCAATGGCCAAGGCTCTGGCAACTCATCATCATCTGCGGATGATGAGCATGTCTAA 918 0.4662 MEEREIFGSGHAVNVNQVPQSFNLAQNSLNFSGATGELPAPASAPAAAAGGMEVKKKRGRPRKSESGSKPALSPMPISASIPLTGDFSGWKSGGGKPFESIKKPLKLNDFDEDDGTASPGSNFKTHVLTVNSGEDVSMKIMSLSQQEYHTISILSATGTISNVTLRQSDASGGTSTYEGVFEILSLSGSFVPTENGLTKSRAGRMSVSLAGPNGRVFGGALAGLLVAAGSVQVVVASFQPEQQKPKKQRTDYTALPAPPTSSHINNHVSAEQLKPIMSPAGFNFASFGNGQGSGNSSSSADDEHV 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01540 305 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 36 291 IPR039605 GO:0003680
Trre11g01540 305 Gene3D - 124 259 - -
Trre11g01540 305 Pfam Plants and Prokaryotes Conserved (PCC) domain 124 239 IPR005175 -
Trre11g01540 305 MobiDBLite consensus disorder prediction 240 264 - -
Trre11g01540 305 MobiDBLite consensus disorder prediction 30 78 - -
Trre11g01540 305 SUPERFAMILY AF0104/ALDC/Ptd012-like 121 252 - -
Trre11g01540 305 ProSiteProfiles PPC domain profile profile. 120 259 IPR005175 -
Trre11g01540 305 CDD DUF296 124 238 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01540 Trre-Chr11 15003976 15008139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01540 41 249 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 54.894 1.22e-65 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01540 - - mtr:11422923 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01540 11 15003976 15008139 Trre1g03467 1 31191082 31195126 ECH
Trre11g01540 11 15003976 15008139 Trre11g01540 11 15003976 15008139 ECH
Trre11g01540 11 15003976 15008139 Trre1g03467 1 31191082 31195126 PCT