Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01527 ATGGGGTGGGGTCACCTTCCAAGTCATGGCTCCGATTCCGGTAACAACGCCGATGAAGGTCCGAGCACCACTACGCCGGTACCACGGCAGTTTCCTCCGGCTGCTCAACCGGAAATGATGCGAGCAGCTGAAAAAGACGATCAATACGCCTCTTTCGTTTACGAAGCTTGTCGCGACGCCTTCCGCCACCTCTTCGGTACTAGAGTTGCAGTGGCTTATCAAAACGAGACGAAACTTTTAGGGCAAATGCTTTACTATATTCTCACAACAGGCTCTGGACAACAAACACTTGGTGAAGAATATTGTGATATCACTCGGGTTGCAGGAACTTATGGACTTCCTCCTACACCGGCAAGGCGTGCTTTGTTCATTGTATACCAGTCGGCGATTCCATACGTTGCAGAACGAATTAGTTCTAGAATCGCTTCCCGGGGAATTATCCTTGCTGAATATGAGTCTGCTGAGAGTTATTATGGTGAAAATGCCCGCGGGAGTAGTAGTTCTCGGGTTTATGCCATGAGTGAACTTTCTACTTCGTCTACCTTAGGGCAGTGTACTTCAACTCTGACGAGGTTGAAGGACAAACTCGGTGGGTTTTGGTTGCATATGGTTCAGAGATGGCCTACGATGCTCCCTTTTGCTCGTGAGTTATTGCAGTTGCTTCTACGTGCTAACCTCATGTTGTTTTACTTTGAAGGTCTCTATTATCATATATCCAAACGTGCTGCAGGCATTCGTTATGTGTTCATTGGAAAAGCGTCAAATCAAAGACCCAGATATCAAATACTGGGAGTATTTCTCTTGATTCAACTTTGTGTAATAGCTGCTGAAGCGCTGCGTCGAAGAAATTTTACATCAATTGCTGGTTCAGTTCATGAGGCATCCTTTGCAACCGGCCATACATCAGCAGGACATGGTTTGCCTATTCTAAATGAAGAAGGTAATTTGGTATCTCCAGAAGCTGATAATGGAAGTTGGGTCCATGGATCTTCATCTTCCGAGCATCATGCATCTAGTGGTGTTAGCAAATGCACACTTTGCCTGAGTAATCGTCAACAGCCAACAGCTACTTCCTGTGGCCATGTATTTTGCTGGAACTGTATCACAGAATGGTGCAGTGAAAAGCCAGAGTGCCCTCTTTGCCGCACTCCTATAACACACTCAAGTCTAGTTTGTATTTATCATTCAGACTTCTAG 1197 0.4578 MGWGHLPSHGSDSGNNADEGPSTTTPVPRQFPPAAQPEMMRAAEKDDQYASFVYEACRDAFRHLFGTRVAVAYQNETKLLGQMLYYILTTGSGQQTLGEEYCDITRVAGTYGLPPTPARRALFIVYQSAIPYVAERISSRIASRGIILAEYESAESYYGENARGSSSSRVYAMSELSTSSTLGQCTSTLTRLKDKLGGFWLHMVQRWPTMLPFARELLQLLLRANLMLFYFEGLYYHISKRAAGIRYVFIGKASNQRPRYQILGVFLLIQLCVIAAEALRRRNFTSIAGSVHEASFATGHTSAGHGLPILNEEGNLVSPEADNGSWVHGSSSSEHHASSGVSKCTLCLSNRQQPTATSCGHVFCWNCITEWCSEKPECPLCRTPITHSSLVCIYHSDF 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01527 398 ProSiteProfiles Zinc finger RING-type profile. 344 382 IPR001841 -
Trre11g01527 398 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 32 396 IPR025654 GO:0005778|GO:0007031|GO:0008270|GO:0016558
Trre11g01527 398 SUPERFAMILY RING/U-box 343 387 - -
Trre11g01527 398 MobiDBLite consensus disorder prediction 9 25 - -
Trre11g01527 398 CDD RING-HC_PEX10 342 393 - -
Trre11g01527 398 SMART ring_2 344 381 IPR001841 -
Trre11g01527 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 321 395 IPR013083 -
Trre11g01527 398 Pfam Pex2 / Pex12 amino terminal region 46 281 IPR006845 -
Trre11g01527 398 FunFam Peroxisome biogenesis factor 10 319 395 - -
Trre11g01527 398 Pfam Zinc finger, C3HC4 type (RING finger) 343 387 - -
Trre11g01527 398 ProSitePatterns Zinc finger RING-type signature. 359 368 IPR017907 -
Trre11g01527 398 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01527 Trre-Chr11 14866152 14871915 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01527 338 394 C3H Transcription Factor Family AT4G28270 34.247 2.69e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01527 K13346 - gmx:100783914 645.195