Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01506 ATGCCTTCACTACCTATAACTAACGACGCCGTTTCAATGGAAAGCCCTAAGCAAAAATCAATTAAGAAGAAGAAGGAAAAGCTTCAAAACGACATCGTTATGGAGGAAGAATCAGCGAAGAAGAGTTCAAAGAAGAGGAAGAAAGGTTCAGATGATGATGAAGAAGTTAAGAGTGGAACTAGCTCTGATGAAGGTTCTAGAATGAAAGTGAAGAAGGAGAAAGAGAAGAAGAAATCGAAGGTTGATGATGATGATGATGATGATGAAGAAGTTGTTGTGAAGAAGGATGATCCTAATGCGGTTTCGAATTTTAGAATTTCCGAACCGTTGAGGATGAAATTGAAGGAAAATGGAATTGAAGCTTTGTTCCCGATTCAAGCTATGACTTTTAATACTATTCTCGATGGTTCTGATTTGGTTGGTCGTGCTCGTACTGGTCAGGGTAAAACTCTTGCATTTGTGTTGCCCATATTAGAGTCATTGACAAATGGTCCAGCTAAATCGGTTAGAAAGGCTGGTTATGGGAGGGTTCCAAGTGTCCTCGTGCTTTTACCTACTAGGGAATTGGCCAATCAGGTGTATGCTGACTTTGAACTTTATGGTTCGTCCTTGGGATTGGCTGCTTGCGCTGTATATGGAGGAGCTCCGTATGGACCTCAGGAGAATAAGCTCAGGAGAGGTGTTGATATTGTTATTGGAACACCAGGTCGTATTAAGGATCATATTGAGAAGGGAAATATTGACCTGAGCCACCTAAAGTTCCGTGTACTTGATGAGGCAGATGAGATGTTGAGGATGGGTTTTGTTGATGATGTTGAACTCATTCTAGGCAAGGTACAAGATGTTACTAAAGTACAGACCCTTCTTTTCAGTGCTACTTTGCCAAGCTGGGTTAAACAAATTTCTACAAAATTTCTGAAAGCAGATAAGAAAACTGCCGATCTTGTTGGGAATGAGAAAATGAAGGCTAGCACCAATGTTAGGCATATCATCCTTCCCTGTAATAATACTGCCATGGCACAACTTATCCCCGACATTATTCGCTGTTATAGCAGCGGAGGCCGGACAATTATATTTGCGGAGAAAAAAGAGTCTGCTTCTGAGCTTGCTGGATTGTTGCCTGGTGCAAGAGCTCTCCATGGTGATATACAGCAGTCACAACGTGAGGTTACATTGAAAGCTTTTAGGTCTGGGAAATTCATGACTTTGGTGGCCACTAATGTGGCGGCCAGAGGTCTAGACATTAATGATGTTCAGTTGATTATTCAGTGTGAGCCTCCCCGGGATGTAGAAGCGTATATACATCGATCTGGGCGAACAGGAAGAGCTGGCAACACTGGAGTTGCTGTGATGCTTTATGATCCCAGAAGGTCGAATATAGCTAAAATAGAAAGAGAAGCAGGTATAAAATTTGAACGTGTATCTGCTCCTCAACCTGATGAAATCGCCAAAGCTATGGGTGGGGATGCTGCTGAAATGATTACTGATGTATCTGATAGTGTAATTCCTGCATTCAAATCTGCCGCTGAGGAACTTTTGAAAAACTCTGGTTTATCAGCTGTTGAGTTACTTGCAAAAGCTCTTGCCAAGGCTGTTGGTTATACTGATGTAAAGAAAAGATCATTACTGACTTCAATGGAGAATTATGTTACCTTACTTCTTGAGGGAGGAAAACCTATGTTCACCCCATCCTTTGCATTTGGAACCCTGAGGAGATTCGTACCTGAGGATAAGGTTGACGCAGTACAAGGTCTTGCTCTAACTGCAGATGGCCAGGGTGCTGTGTTTGATGTACCAGCCAAGGACTTGGACGTATTTCTTAACAGTCAAAAGAATGCTGTTAATGTAAGCCTAAAGATTGTTAAAGAATTGCCAAGTTTACAACAAAGAGAGGACAATAGACCAAGCAGATACGGTGGTGGCCGTGGGTTTTCGGGTGGAAGAAACGGAGGGTATAGGTTTGGCGGAAGAAGTGGTGGCGGTGGTGGAAGAGGTTTTGGAGGAGGCAGAGGAGGTGGCAAGAGATGGTAA 2031 0.4279 MPSLPITNDAVSMESPKQKSIKKKKEKLQNDIVMEEESAKKSSKKRKKGSDDDEEVKSGTSSDEGSRMKVKKEKEKKKSKVDDDDDDDEEVVVKKDDPNAVSNFRISEPLRMKLKENGIEALFPIQAMTFNTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKSVRKAGYGRVPSVLVLLPTRELANQVYADFELYGSSLGLAACAVYGGAPYGPQENKLRRGVDIVIGTPGRIKDHIEKGNIDLSHLKFRVLDEADEMLRMGFVDDVELILGKVQDVTKVQTLLFSATLPSWVKQISTKFLKADKKTADLVGNEKMKASTNVRHIILPCNNTAMAQLIPDIIRCYSSGGRTIIFAEKKESASELAGLLPGARALHGDIQQSQREVTLKAFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNIAKIEREAGIKFERVSAPQPDEIAKAMGGDAAEMITDVSDSVIPAFKSAAEELLKNSGLSAVELLAKALAKAVGYTDVKKRSLLTSMENYVTLLLEGGKPMFTPSFAFGTLRRFVPEDKVDAVQGLALTADGQGAVFDVPAKDLDVFLNSQKNAVNVSLKIVKELPSLQQREDNRPSRYGGGRGFSGGRNGGYRFGGRSGGGGGRGFGGGRGGGKRW 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01506 676 SMART ultradead3 118 330 IPR014001 -
Trre11g01506 676 Pfam GUCT (NUC152) domain 533 628 IPR012562 GO:0003723|GO:0004386|GO:0005524
Trre11g01506 676 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 341 482 IPR001650 -
Trre11g01506 676 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 130 312 IPR014001 -
Trre11g01506 676 MobiDBLite consensus disorder prediction 1 15 - -
Trre11g01506 676 CDD DEADc 110 307 - -
Trre11g01506 676 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 457 IPR027417 -
Trre11g01506 676 SUPERFAMILY RNA-binding domain, RBD 538 618 IPR035979 GO:0003676
Trre11g01506 676 MobiDBLite consensus disorder prediction 629 676 - -
Trre11g01506 676 CDD SF2_C_DEAD 327 453 - -
Trre11g01506 676 MobiDBLite consensus disorder prediction 16 83 - -
Trre11g01506 676 Gene3D - 7 312 IPR027417 -
Trre11g01506 676 CDD GUCT_RH7_like 540 625 - -
Trre11g01506 676 Coils Coil 18 45 - -
Trre11g01506 676 Pfam Helicase conserved C-terminal domain 346 444 IPR001650 -
Trre11g01506 676 SMART helicmild6 367 444 IPR001650 -
Trre11g01506 676 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 45 516 - -
Trre11g01506 676 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 256 264 IPR000629 -
Trre11g01506 676 Pfam DEAD/DEAH box helicase 123 300 IPR011545 GO:0003676|GO:0005524
Trre11g01506 676 Gene3D - 322 549 IPR027417 -
Trre11g01506 676 Gene3D - 550 623 - -
Trre11g01506 676 MobiDBLite consensus disorder prediction 1 94 - -
Trre11g01506 676 FunFam DEAD-box ATP-dependent RNA helicase 7 550 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01506 Trre-Chr11 14619290 14623891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01506 86 482 Eukaryotic Initiation Factors Gene Family AT3G19760 29.540 7.33e-43 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01506 K16911 - jre:108998595 874.774