Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01493 ATGATTGCAGAAGTTGTCTTAGTAGTGCTATTGGGTATCTTCCAAGGTGTTGTGATGATGGAAAGCAGGGTTGGAGAATTTTATTCCCCAGCTGCAGTATTAGAGAAGGGGAAGTTGGGAAGAATTATCGGAATTGTTGTCGCTACCGTTATTTTTGTAATGCTCTTTTCTACCGGCTATTATTTCCTAAAGAGAAGGCAAAGAAAGAGCCGTAGGACTATTCTTCGAGAAAATTTTGGTGAAGAAAGTGTCGCTTTAGAACCACTGCAGTTTGATTGGGCGGTAATTGAAGCAGCAACCAACAACTTTTCTAATGACAATTACATTGGAAAAGGCGGGTTTGGAGAGGTATACAAGGGTATGCTAATTGATGGACGAGAAGTGGCTGTAAAGAGACTTTCAAGAAGTTCTACGCAAGATGAAAATATGATCCCTAAAATATCCGATTTTGGTTTGGCTCGAATTGTCGAAATAAGTCAAGATGAAGGAAGTACAAATAGAATTGTGGGAACATATGGTTATATGTCTCCGGAATATGTAATGTTTGGACAATTTTCTGAAAAATCCGACGTTTATAGTTTTGGAGTCATGGTTTTAGAGATTGTTGCCGGAAAGAAGAATATAAGTTCACATACACCTCACCATGTTGCTGATAGCCTCTTGAGCTATGTTTGGAGACAATGGAAGGATCAAACCCCTTTAAGTATATTGGACCCAAATATTAAAGAAGATTATTCTTCAAACATGGAAGTCATTAGGTGCATTCAAATTGGTCTATTATGTGTTCAAAATGACTCAGAAGCTAGACCAACAATGGTGACGGTTGCTTCATATCTTAGCAGTAATTCAATTGAATTACCAATTCCACAAGAACCTGCTTTTTTGTTGCATGGTAGAACGTATTCAAGTTCTACTCAATCTGCCAATAGTTCTGCACTATTGTCTATCAATGAAATGACTACAAGTCAGACTCAGATCCATGAAGCATTGCAATTTCATGACAAATTGGTAGCCCAAGGATTTCAGTTGAACCAAGTTAGTTACGGGACTTTGATCAATGGGTTATGTAAAGTCGGAGAAACAAGTGAAGCCCTACAATTGCTGAGGCGTATTGATGGGAAGTTGGTTCTACCTAATGTGGTAATGTACACTGCAATTATTGATAGTATGTGCAAAGATAAACTTGTTGATGATGCTTTTGATTTATATTCTGAAATGGTTGCTAAGAGAATTTCTCCTAATGTTTACACTTATAATGCTTTAATTAATGGCTTTTGCGTTGTTGGTAAATTGAAAGCAGCCATTGATTTGTTTAATAAAATGATATTGGAAAACATCAACCCGCATGTGTATACATTTAATATATTGGTTGATGCTTTTTGTAAGGAAGGAAAAGTGAAAGAAGCTAATAATGTATTTGCTATGATGATGAGAAAAGGTGTTAAACCTGATGTTGTTACTTATAATTCTTTAATGGATGGATATTGCTTAGTTAAAGAAATGAACAAGGCCAAGGGTATATTCAACACCATAGCCGCCCAAAGTGTATGGTAA 1554 0.3649 MIAEVVLVVLLGIFQGVVMMESRVGEFYSPAAVLEKGKLGRIIGIVVATVIFVMLFSTGYYFLKRRQRKSRRTILRENFGEESVALEPLQFDWAVIEAATNNFSNDNYIGKGGFGEVYKGMLIDGREVAVKRLSRSSTQDENMIPKISDFGLARIVEISQDEGSTNRIVGTYGYMSPEYVMFGQFSEKSDVYSFGVMVLEIVAGKKNISSHTPHHVADSLLSYVWRQWKDQTPLSILDPNIKEDYSSNMEVIRCIQIGLLCVQNDSEARPTMVTVASYLSSNSIELPIPQEPAFLLHGRTYSSSTQSANSSALLSINEMTTSQTQIHEALQFHDKLVAQGFQLNQVSYGTLINGLCKVGETSEALQLLRRIDGKLVLPNVVMYTAIIDSMCKDKLVDDAFDLYSEMVAKRISPNVYTYNALINGFCVVGKLKAAIDLFNKMILENINPHVYTFNILVDAFCKEGKVKEANNVFAMMMRKGVKPDVVTYNSLMDGYCLVKEMNKAKGIFNTIAAQSVW 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01493 517 Gene3D Tetratricopeptide repeat domain 288 413 IPR011990 GO:0005515
Trre11g01493 517 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 484 517 IPR002885 -
Trre11g01493 517 NCBIfam pentatricopeptide repeat 346 371 IPR002885 -
Trre11g01493 517 NCBIfam pentatricopeptide repeat 416 448 IPR002885 -
Trre11g01493 517 NCBIfam pentatricopeptide repeat 451 485 IPR002885 -
Trre11g01493 517 NCBIfam pentatricopeptide repeat 381 415 IPR002885 -
Trre11g01493 517 NCBIfam pentatricopeptide repeat 486 509 IPR002885 -
Trre11g01493 517 SUPERFAMILY Protein kinase-like (PK-like) 91 314 IPR011009 -
Trre11g01493 517 Gene3D Transferase(Phosphotransferase) domain 1 140 286 - -
Trre11g01493 517 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524
Trre11g01493 517 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Trre11g01493 517 Gene3D Transferase(Phosphotransferase) domain 1 85 139 - -
Trre11g01493 517 Gene3D Tetratricopeptide repeat domain 414 516 IPR011990 GO:0005515
Trre11g01493 517 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 449 483 IPR002885 -
Trre11g01493 517 Pfam Protein kinase domain 144 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g01493 517 Pfam PPR repeat family 378 426 IPR002885 -
Trre11g01493 517 Pfam PPR repeat family 448 496 IPR002885 -
Trre11g01493 517 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Trre11g01493 517 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 378 IPR002885 -
Trre11g01493 517 ProSiteProfiles Protein kinase domain profile. 1 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g01493 517 Pfam PPR repeat 340 370 IPR002885 -
Trre11g01493 517 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 36 140 - -
Trre11g01493 517 SUPERFAMILY HCP-like 321 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01493 Trre-Chr11 14501758 14505653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01493 63 320 Receptor kinase-like Gene Family AT4G23280 38.111 8.24e-63 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre11g01493 Pkinase 1.4e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01493 - - vum:124825842 306.99