Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01488 ATGTTCTATGCAGGAAAAAGGAGAAATGGGCCAGGAGCAATTGCCTTGATTGTTGTGCTCACAATTGCTCCGGTGATACTCCTCTTTGTTGGATGCTATTTGCTAAAGAGAAAATCAAGAAAGAGTTTTAGGTCTATGCTTAGAGAAAATTTTGGTCAAGAAAGTGCAACTCTAGAGCCATTGCAATTTGACTTTGCTGTAATTGAAGCAGCAACCAACAAATTTTCAAATGAAAATTTCATTGGCAAAGGTGGATTTGGAGAAGTTTACAAGGGCACACTTTTGGATGGACGACAAATAGCAGTAAAAAGACTCTCAAGAAGCTCTACGCAAGGTGCAAAAGAGTTCAAAAATGAAGTTTTGCTAATCGCTAAGCTTCAACATCGAAATCTAGTCACATTCATTGGTTTTTGCCTCGAAGAACAAGAGAAAATACTTATTTATGAATATGTGCCAAACAAGGGCCTTGATCACTTTTTATTTGATTTTCAACGAACAAAGTTCTTAAGTTGGTTGGAACGTTACAATATTATAAGAGGAATTGCTCATGGAATTCTCTATTTACATGAACATTCTCGACTCAAAGTTATTCATCGTGATCTCAAACCTAGTAATATTTTACTAGATGAAGACATGATTCCAAAAATATCAGATTTTGGTCTTGCAAGAATTGTTGAATTAAACCAAGACAAAGGAAGTACCAATAGAATCGTCGGAACATTAGGTTATATGTCTCCAGAATATGCAATGCTCGGACAATTTTCGGAGAAATCCGACGTTTATAGTTTTGGAGTCATGGTTTTAGAAATTATTACCGGAAAGAAGAATGTAAGGTCTTATGAATCACTTGTTGGTGATAGCTTCTTGAGTTATGTTTGGAGACAATGGAGGGATAAAATACCATTAAGCATTTTAGACTCAAACATTAAAGGAACTTATTCTGAATTTGAAGTCATTAAATGCATTCATATTGGTTTATTATGTGTTCAACAATTCCCTGATGCAAGGCCAACAATGGTAACAATTGTTTCATATCTTAACAATGATTTCATTGAATTGCCAACTCCACAAGAACCTGCATTTTTGTTCCATGATCAAATGGGTGCAAAAGGGATTCCACAAGATTCAAGTTCTAGTCAATCTATAAATAGTTGCACACCTTTAACTACCAATGACTTGTCTATAACTGAATTTCTTCCTCGCTAG 1206 0.3516 MFYAGKRRNGPGAIALIVVLTIAPVILLFVGCYLLKRKSRKSFRSMLRENFGQESATLEPLQFDFAVIEAATNKFSNENFIGKGGFGEVYKGTLLDGRQIAVKRLSRSSTQGAKEFKNEVLLIAKLQHRNLVTFIGFCLEEQEKILIYEYVPNKGLDHFLFDFQRTKFLSWLERYNIIRGIAHGILYLHEHSRLKVIHRDLKPSNILLDEDMIPKISDFGLARIVELNQDKGSTNRIVGTLGYMSPEYAMLGQFSEKSDVYSFGVMVLEIITGKKNVRSYESLVGDSFLSYVWRQWRDKIPLSILDSNIKGTYSEFEVIKCIHIGLLCVQQFPDARPTMVTIVSYLNNDFIELPTPQEPAFLFHDQMGAKGIPQDSSSSQSINSCTPLTTNDLSITEFLPR 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01488 401 Gene3D Phosphorylase Kinase; domain 1 36 150 - -
Trre11g01488 401 CDD STKc_IRAK 81 348 - -
Trre11g01488 401 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
Trre11g01488 401 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 36 150 - -
Trre11g01488 401 SMART serkin_6 75 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g01488 401 Gene3D Transferase(Phosphotransferase) domain 1 151 352 - -
Trre11g01488 401 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Trre11g01488 401 SUPERFAMILY Protein kinase-like (PK-like) 58 370 IPR011009 -
Trre11g01488 401 ProSiteProfiles Protein kinase domain profile. 75 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g01488 401 Pfam Protein kinase domain 76 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g01488 401 ProSitePatterns Protein kinases ATP-binding region signature. 81 103 IPR017441 GO:0005524
Trre11g01488 401 FunFam cysteine-rich receptor-like protein kinase 10 151 353 - -
Trre11g01488 401 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 13 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01488 Trre-Chr11 14449857 14451539 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01488 5 401 Receptor kinase-like Gene Family AT4G05200 51.250 7.01e-136 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre11g01488 Pkinase 3.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01488 - - gmx:100806048 586.645