Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01477 ATGGCTAATTTCCATAAAATTCTCCATCTCTTAACCATAATTATTTTCCTCAATACTTTCACATCTACCAATTCATGGGATGACCCTTTTTTCCTAAACACATATTGCTCAAGCAACACAACATCAGCCTATACTTCATTCCAATTTGATCTCACCAACCTCCTCAATTCCTTATCATCATATGCCACAACAAAAACCAACACAAAATTCTACAACACAACATTCATTGGTAACAACCCTTCTGACATAATCTATGGAATGTTCTTATGTAGAAATGATGTTCCATCTCAACTTTGTCAACAATGTATAGTCAATGCAACACAAAGACTTTCCTCACAATGTTCTTTGTCTAAAGAAGGTGTTGTTTGGTACAATGAATGTATGGTTTGGTATTCCACATCATTTATCTTCTCCACTTTTGCAACAACATCACATAGTTTTTACTTGTTGAACACTGACAAAGTCTCAAACACAAAAAGTTTCATGAGTTTATTGTTTTCTACAATGAATAAATCTGCTGATGAAGCTGCTTTTGGTGACAAAAAATTTGCAACAAATGAAAAAACTATTTCAAAATTTCAAACCCTTTATTGTTTAACTCAATGCACACCAAATTTGTCACCACATGAATGTAGAATTTGTCTAAGTGGTTTAATAAACCAACTTCCAATGTGTTGTGAAGGTAGAGTTGGAGGAAGAGTTCTTAATCCAAGTTGTAATATTAGGTATGAATTTTATCCTTTTTATCTTAAATCTATTGGTTCATCAAATCTTTCATCACAACAATTTCTACTTCCACAAACAAAAAATTCATATGATGATGATTCAATGTTTTTAGAACAACCTTTTTACCTTTCACATAATTGTTCAAGTAACAAAACCTTCACTTTTAGTAACACTTTCAAAGTTCATCTCACAACCCTTTTTTCTTACTTATCTTCTAATGCCACCAAAAATCTATTTCATAAAGTTAATGTGGAAAATTCAACTTTTGGACTCTTCATGTGTCGTGGTGATGTTTCTTTTTCCATATGTGAGCTATGTGTGAAAAATGCAACACAAAAATTAATCAAAGGGGGGTGTGACAATTTTCAAGAGGGTATAATTTGGTATAGTCAATGCATGATAAGATATTCAAATTGGAATTTTTTCTCTTTAGTGGACAAAAATCATGTGTATTATGAGATGAATGTTACTAATGATTCTACTCCAAACAAAGAGAAAAACTTGTTCAATTTTGTTATATCAACAACCTTATCAAATGTTGCAATTGTGGCTGGTGATAGTGATGAAAGATATGGAACAAAATCATTGAAATTGAATGATTTACAAACACTTTATACACTTGGTCAATGTACACAAGATTTGACAAGTGATGATTGCAAAGGTTGTTTAGGAGATGTTATTGGAAATGGAATTCCTTGGCCTTATTTAGGAAGTGTTGGTGGAAGAGTTTTATATCCTAGCTGCAATTTGAGGTTTGAATTGTTTCAATTTTATAAGGACAATGAGAATGTTACCACACCAAGAAATAGTCATTCTTCATCAGGAAAAAGGAGAAATGGGCCAGGAGCAATTGCCTTGATTGTTGTGCTCACAATTGCTCCGATGATACTCCTCTTTGTTGGATGCTATTTGCTAAAGAGAAAATCAAGAAAGAGTTTTAGGTCTATGCTTAGAGAAAATTTTGGTCAAGAAAGTGCAACTCTAGAGCCATTGCAATTTGACTTTGCTGTAATTGAAGCAGCAACCAACAAATTTTCAAATGAAAATTTCATTGGCAAAGGTGGATTTGGAGAAGTTTACAAGGGCACACTTTTGGATGGACGACAAATAGCAGTAAAAAGACTCTCAAGAAGCTCTACGCAAGGTGCAAAAGAGTTCAAAAATGAAGTTTTGCTAATCGCTAAGCTTCAACATCGAAATCTAGTCACGTTCATTGGTTTTTGCCTCGAAGAACAAGAGAAAATACTTATTTATGAATATGTGCCAAACAAGGGCCTTGATCACTTTTTATTTGATTTTCAACGAACAAAGTTCTTAAGTTGGTTGGAACGTTACAATATTATAAGAGGAATTGCTCATGGAATTCTCTATTTACATGAACATTCTCGACTCAAAGTTATTCATCGTGATCTCAAACCTAGTAATATTTTACTAGATGAAGACATGATTCCAAAAATATCAGATTTTGGTCTTGCAAGAATTGTTGAATTAAACCAAGACAAAGGAAGTACCAATAGAATCGTCGGAACATTAGGTTATATGTCTCCAGAATATGCAATGCTCGGACAATTTTCGGAGAAATCCGACGTTTATAGTTTTGGAGTCATGGTTTTAGAAATTATTACCGGAAAGAAGAATGTAAGGTCTTATGAATCACTTGTTGGTGATAGCTTCTTGAGTTATGTTTGGAGACAATGGAGGGATAAAATACCATTAAGCATTTTAGACTCAAACATTAAAGGAACTTATTCTGAATTTGAAGTCATTAAATGCATTCATATTGGTTTATTATGTGTTCAACAATTCCCTGATGCAAGGCCAACAATGGTAACAATTGTTTCATATCTTAACAATGATTTCATTGAATTGCCAACTCCACAAGAACCTGCATTTTTGTTCCATGATCAAATGGGTGCAAAAGGGATTCCACAAGATTCAAGTTCTAGTCAATCTATAAATAGTTGCACACCTTTAACTACCAATGACTTGTCTATAACTGAATTTCTTCCTCGCTAG 2742 0.3326 MANFHKILHLLTIIIFLNTFTSTNSWDDPFFLNTYCSSNTTSAYTSFQFDLTNLLNSLSSYATTKTNTKFYNTTFIGNNPSDIIYGMFLCRNDVPSQLCQQCIVNATQRLSSQCSLSKEGVVWYNECMVWYSTSFIFSTFATTSHSFYLLNTDKVSNTKSFMSLLFSTMNKSADEAAFGDKKFATNEKTISKFQTLYCLTQCTPNLSPHECRICLSGLINQLPMCCEGRVGGRVLNPSCNIRYEFYPFYLKSIGSSNLSSQQFLLPQTKNSYDDDSMFLEQPFYLSHNCSSNKTFTFSNTFKVHLTTLFSYLSSNATKNLFHKVNVENSTFGLFMCRGDVSFSICELCVKNATQKLIKGGCDNFQEGIIWYSQCMIRYSNWNFFSLVDKNHVYYEMNVTNDSTPNKEKNLFNFVISTTLSNVAIVAGDSDERYGTKSLKLNDLQTLYTLGQCTQDLTSDDCKGCLGDVIGNGIPWPYLGSVGGRVLYPSCNLRFELFQFYKDNENVTTPRNSHSSSGKRRNGPGAIALIVVLTIAPMILLFVGCYLLKRKSRKSFRSMLRENFGQESATLEPLQFDFAVIEAATNKFSNENFIGKGGFGEVYKGTLLDGRQIAVKRLSRSSTQGAKEFKNEVLLIAKLQHRNLVTFIGFCLEEQEKILIYEYVPNKGLDHFLFDFQRTKFLSWLERYNIIRGIAHGILYLHEHSRLKVIHRDLKPSNILLDEDMIPKISDFGLARIVELNQDKGSTNRIVGTLGYMSPEYAMLGQFSEKSDVYSFGVMVLEIITGKKNVRSYESLVGDSFLSYVWRQWRDKIPLSILDSNIKGTYSEFEVIKCIHIGLLCVQQFPDARPTMVTIVSYLNNDFIELPTPQEPAFLFHDQMGAKGIPQDSSSSQSINSCTPLTTNDLSITEFLPR 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01477 913 ProSiteProfiles Gnk2-homologous domain profile. 283 383 IPR002902 -
Trre11g01477 913 CDD STKc_IRAK 593 860 - -
Trre11g01477 913 Gene3D - 390 499 IPR038408 -
Trre11g01477 913 Gene3D - 282 383 IPR038408 -
Trre11g01477 913 Gene3D - 29 135 IPR038408 -
Trre11g01477 913 Gene3D - 142 248 IPR038408 -
Trre11g01477 913 ProSitePatterns Serine/Threonine protein kinases active-site signature. 708 720 IPR008271 GO:0004672|GO:0006468
Trre11g01477 913 ProSitePatterns Protein kinases ATP-binding region signature. 593 615 IPR017441 GO:0005524
Trre11g01477 913 FunFam Cysteine-rich receptor-like protein kinase 25 145 248 - -
Trre11g01477 913 ProSiteProfiles Gnk2-homologous domain profile. 29 136 IPR002902 -
Trre11g01477 913 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 283 909 - -
Trre11g01477 913 ProSiteProfiles Gnk2-homologous domain profile. 393 499 IPR002902 -
Trre11g01477 913 FunFam cysteine-rich receptor-like protein kinase 10 663 865 - -
Trre11g01477 913 SUPERFAMILY Protein kinase-like (PK-like) 570 881 IPR011009 -
Trre11g01477 913 Gene3D Transferase(Phosphotransferase) domain 1 663 864 - -
Trre11g01477 913 Pfam Salt stress response/antifungal 159 245 IPR002902 -
Trre11g01477 913 Pfam Salt stress response/antifungal 406 495 IPR002902 -
Trre11g01477 913 Pfam Salt stress response/antifungal 289 380 IPR002902 -
Trre11g01477 913 Pfam Salt stress response/antifungal 36 133 IPR002902 -
Trre11g01477 913 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 548 662 - -
Trre11g01477 913 ProSiteProfiles Gnk2-homologous domain profile. 143 248 IPR002902 -
Trre11g01477 913 SMART serkin_6 587 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g01477 913 FunFam Cysteine-rich receptor-like protein kinase 25 391 499 - -
Trre11g01477 913 ProSiteProfiles Protein kinase domain profile. 587 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g01477 913 Pfam Protein kinase domain 588 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g01477 913 Gene3D Phosphorylase Kinase; domain 1 548 662 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01477 Trre-Chr11 14379680 14383923 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01477 282 913 Receptor kinase-like Gene Family AT4G05200 44.733 1.89e-179 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre11g01477 Pkinase 2.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01477 - - gmx:100806048 1220.68