Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01438 ATGCTTCCCCGTAAACTCTTTCAATCTCAGCCGTCCACTTCATCATCCTCACCACAACCACCTCACCACCACCACATCTTAATTCCTCTCCTCGCCGGAACCGCCGTCGTACTAACTTTTCTCCTCTTCTTCACTTTCCTCTGCCGCCGCACCCGAAAAAAACGCACATCCCCATTCTCCATCACTGACGACAATCCACCTCACCGTTACTCCTACTCTCTCCTCCGCCGCGCCACAAACTCTTTCTCAAACCCACTCGGTCACGGTGGTTTCGGCACCGTCTTCTCCGGTACACTTTCTTCAAAACCAATCGCTGTTAAGCTCATGGATACTTCTTCTCACCAAGGTGAACGCGAATTTCACAACGAACTCTTTTTCGCTTCGAAGCTTCGTTCTCTTTATATAATTCCTCCGTTAGGGTTTTCGTCTGATCCAAAACGACGTCGTTTTCTACTTGTTTATCCTTTAATGCAAAACGGTAATCTTCAAGATGCACTTTTGAAGCGTAAGTGTTCTGAACTTTTTAATTGGGAAAAAAGATTTGAAATTGTTTTGGATATTGCTAAGGGACTTTGTTATCTTCACTCTTTTGATCCTCCTGTTATACATGGTGATATAAAACCTAGTAATATTCTTTTAGATTGTGATTTTAATGCTAAAATCGGCGATTTCGGACTTGCTCGGTTGAAATCGGAGCCGGTTAGGGTTGATGTTGAGCTTTTAGGTATTGAAAGTGATGATGAAATGAAGAAAAGGAATGAAAATGATGATTTGGAGTGTGGTGGTGTTCGAGTTGTGATTGATGATTGTGGATCAATGGAGAGTGTGCATACTGGTTTTTTTGAAGAGGGTGGTAATTTGGGTATGGAGCAATCTTCGGTGGCTTCGCCGGAAACTGTTGAGATGAGAATGACTATGACAATGGCATTGGCGGCGTCGCCGGGTTTTGAAAAGGGGAGTGTGAAGAGTGAGAAGGATGTTGTTGGTGTTGAGGATGGTAAGAGAAATGGGAAAGGGTTGACGAGTAATTCGGTTAGGGATTGGTGGTGGAAACAAGACAATGAGGTCGCGGGTTTGACACCAGTTGGTGAAGGTAAGAAGGTGAAGGATTATGTTATGGATTGGATTGGTAGGGAAGTGAAAAGTGAGAAGAATGAATTGGTGGGTGTGAAGATGGGGAAGCGGGAGATGAAGAAGGAGAAGAACAGGAAGCAGAAATTGGAATGGTGGGAATCGATGGACGAGGAAAACGTTGGCGGAGTCGTGAAGAAGGAGAATAGAAAGTCGGTGAGGGAATGGTGGAAGGAGGAATATTGTGAAGAGGTTGCAAAGGAGAAGAAGAAGAGGAAGAATAAGAAGATGAAAAAGGGTGTAGAAAATGATGATGACATTAGCAATGACGATACTTGGTGGATGAGTGATGATGCATTATATGGGGATAAAAAGAAGGAAAAGAGAAGAAGCAGGAATAATCGTGGTAATGTCGATTGGTGGTTAGACGGATTCAGTGGTGAGCTATGGCGAGCACGTAGGAATAGCTTCGATTCAGCTAGTGGAGACATTCCAAAAAGTGGTGGTGTGAGTAGTACTCCAAGTATGAGAGGAACCATTTGTTATGTTGCTCCTGAGTATGGCTATGGCGATGATGTCTCCGAAAAGTGTGACGTTTATAGCTTTGGGATCTTATTGCTTGTTATCATTTCTGGGAGGCGCCCACTTCAAGTGACCGGTTCACCGATGTCAGAGTTTCAAAGAGCTAATCTTTTGTCATGGGCACGCCACTGTGCAAGAAACGGGAAGCTCATTGAGCTGGTTGACGAGTCTATTCAGTCATTGAATAAGGACCAAGCTCTGATCTGCATTAAAGTGGCTTTACTTTGTTTGCTTAAGTCACCTGTTCGACGTCCTTCAATGAAGGAGGTTGTCGGGATGCTTAGTGGCGAGCTAGAACCACCCCAATTACCTGTTGAGTACTCACCTTCGACTCCTTCTCGGTTTCCTTTCAAATCCAGGAAGAAAGGCCAAGGCAGGTAA 2034 0.444 MLPRKLFQSQPSTSSSSPQPPHHHHILIPLLAGTAVVLTFLLFFTFLCRRTRKKRTSPFSITDDNPPHRYSYSLLRRATNSFSNPLGHGGFGTVFSGTLSSKPIAVKLMDTSSHQGEREFHNELFFASKLRSLYIIPPLGFSSDPKRRRFLLVYPLMQNGNLQDALLKRKCSELFNWEKRFEIVLDIAKGLCYLHSFDPPVIHGDIKPSNILLDCDFNAKIGDFGLARLKSEPVRVDVELLGIESDDEMKKRNENDDLECGGVRVVIDDCGSMESVHTGFFEEGGNLGMEQSSVASPETVEMRMTMTMALAASPGFEKGSVKSEKDVVGVEDGKRNGKGLTSNSVRDWWWKQDNEVAGLTPVGEGKKVKDYVMDWIGREVKSEKNELVGVKMGKREMKKEKNRKQKLEWWESMDEENVGGVVKKENRKSVREWWKEEYCEEVAKEKKKRKNKKMKKGVENDDDISNDDTWWMSDDALYGDKKKEKRRSRNNRGNVDWWLDGFSGELWRARRNSFDSASGDIPKSGGVSSTPSMRGTICYVAPEYGYGDDVSEKCDVYSFGILLLVIISGRRPLQVTGSPMSEFQRANLLSWARHCARNGKLIELVDESIQSLNKDQALICIKVALLCLLKSPVRRPSMKEVVGMLSGELEPPQLPVEYSPSTPSRFPFKSRKKGQGR 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01438 677 ProSitePatterns Protein kinases ATP-binding region signature. 86 107 IPR017441 GO:0005524
Trre11g01438 677 ProSiteProfiles Protein kinase domain profile. 80 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g01438 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Trre11g01438 677 MobiDBLite consensus disorder prediction 650 677 - -
Trre11g01438 677 Coils Coil 435 455 - -
Trre11g01438 677 MobiDBLite consensus disorder prediction 1 21 - -
Trre11g01438 677 SMART serkin_6 80 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g01438 677 PANTHER OS07G0586332 PROTEIN 10 673 IPR044576 -
Trre11g01438 677 Gene3D Phosphorylase Kinase; domain 1 62 155 - -
Trre11g01438 677 Gene3D Transferase(Phosphotransferase) domain 1 157 253 - -
Trre11g01438 677 Gene3D Transferase(Phosphotransferase) domain 1 512 652 - -
Trre11g01438 677 Pfam Protein tyrosine and serine/threonine kinase 82 230 IPR001245 GO:0004672|GO:0006468
Trre11g01438 677 FunFam Os07g0541700 protein 157 238 - -
Trre11g01438 677 SUPERFAMILY Protein kinase-like (PK-like) 58 664 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01438 Trre-Chr11 14096203 14098236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01438 507 645 Receptor kinase-like Gene Family AT3G58690 30.345 1.32e-10 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Trre11g01438 PK_Tyr_Ser-Thr 5e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01438 - - lja:Lj2g3v0473820.1 887.871