Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01435 ATGGAAGATAACAAGAAGTGGATGCATAAAGAGACAGAAAGGCAAAGAAGACAAGAGATGACCAACCTCTGCTCCTCCCTTAGATCTCTTCTTCCTTTAGAGTATATTAAGGGAAAGCGCTCAATTTCTGATCATGTGAATGAAGCTATTAATTATATCAACCACTTACAAAACAAGGTGAAACAATTAGAAGCTAAGAAGGAAGATTTAATCAAGGTGTCTAGTTTGAATAAAAATATCCCTCAAAATGGCTCTAGTAGTACTAGTAGTACCAATCTTCAACCATTTGTTATTGTTCAACCTTTCCCTGGAGGACTTGAGATTGTGTGCAGTTACACCTCCAAGAAATGTTTGTTTCCTTTGTCAAGAGTGCTAGATATGATGCTTAAAGAAGGGCTTAATGTGATAAGTAGTAATTGCAACAAAATAGATGGAAGATTCATATACACTATACGATCTGAGGATCCAATAATGTCAGGCATTGATTACTCTCAACTGCAAAGAAAGCTTATAGATGCAATATTATCATCCTCAAGTTTGCAAGAGAGTTCGTTTGAACCTGGAATTCACAATATCTTGAGATAA 585 0.3573 MEDNKKWMHKETERQRRQEMTNLCSSLRSLLPLEYIKGKRSISDHVNEAINYINHLQNKVKQLEAKKEDLIKVSSLNKNIPQNGSSSTSSTNLQPFVIVQPFPGGLEIVCSYTSKKCLFPLSRVLDMMLKEGLNVISSNCNKIDGRFIYTIRSEDPIMSGIDYSQLQRKLIDAILSSSSLQESSFEPGIHNILR 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01435 194 CDD bHLH_AtORG2_like 5 79 - -
Trre11g01435 194 Coils Coil 46 73 - -
Trre11g01435 194 SMART finulus 10 62 IPR011598 GO:0046983
Trre11g01435 194 Gene3D - 1 84 IPR036638 GO:0046983
Trre11g01435 194 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 72 IPR036638 GO:0046983
Trre11g01435 194 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 4 171 - -
Trre11g01435 194 Pfam Helix-loop-helix DNA-binding domain 6 57 IPR011598 GO:0046983
Trre11g01435 194 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 56 IPR011598 GO:0046983
Trre11g01435 194 FunFam Transcription factor bHLH126 1 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01435 Trre-Chr11 14076467 14079889 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01435 9 178 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 40.805 1.19e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre11g01435 HLH 6.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01435 - - gmx:100795953 244.202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01435 11 14076467 14079889 Trre11g01435 11 14076467 14079889 ECH