Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01434 ATGAAAAACAACCATAAATATTATCAAGACAAGATTATAGGATATTGTTATATCATGGAAGATAACAAGAAGTGGATGCATAAAGAGACAGAAAGGCAAAGAAGACAAGAGATGACCAACCTCTGCTCCTCCCTTAGATCTCTTCTTCCTTTAGAGTATATTAAGGGAAAGCGCTCAATTTCTGATCATGTGAATGAAGCTATTAATTATATCAACCACTTACAAAACAAGGTGAAACAATTAGAAGCTAAGAAGGAAGATTTAATCAAGGTGTCTAGTTTGAATAAAAATATCCCTCAAAATGGCTCTAGTAGTACTAGTAGTACCAATCTTCAACCATTTGTTATTGTTCAACCTTTCCCTGGAGGACTTGAGATTGTGTGCAGTTACACCTCCAAGAAATGTTTGTTTCCTTTGTCAAGAGTGCTAGATATGATGCTTAAAGAAGGGCTTAATGTGATAAGTAGTAATTGCAACAAAATAGATGGAAGATTCATATACACTATACGATCTGAGGATCCAATAATGTCAGGCATTGATTACTCTCAACTGCAAAGAAAGCTTATAGATGCAATATTATCATCCTCAAGTTTGCAAGAGAGTTCGTTTGAACCTGGAATTCACAATATCTTGAGATAA 639 0.3459 MKNNHKYYQDKIIGYCYIMEDNKKWMHKETERQRRQEMTNLCSSLRSLLPLEYIKGKRSISDHVNEAINYINHLQNKVKQLEAKKEDLIKVSSLNKNIPQNGSSSTSSTNLQPFVIVQPFPGGLEIVCSYTSKKCLFPLSRVLDMMLKEGLNVISSNCNKIDGRFIYTIRSEDPIMSGIDYSQLQRKLIDAILSSSSLQESSFEPGIHNILR 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01434 212 SMART finulus 28 80 IPR011598 GO:0046983
Trre11g01434 212 Coils Coil 64 91 - -
Trre11g01434 212 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 22 74 IPR011598 GO:0046983
Trre11g01434 212 CDD bHLH_AtORG2_like 23 97 - -
Trre11g01434 212 Pfam Helix-loop-helix DNA-binding domain 24 75 IPR011598 GO:0046983
Trre11g01434 212 FunFam Transcription factor bHLH126 17 102 - -
Trre11g01434 212 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 21 90 IPR036638 GO:0046983
Trre11g01434 212 Gene3D - 18 102 IPR036638 GO:0046983
Trre11g01434 212 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 21 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01434 Trre-Chr11 14076467 14079943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01434 27 196 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 40.805 1.08e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre11g01434 HLH 7.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01434 - - gmx:100795953 244.202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01434 11 14076467 14079943 Trre11g01434 11 14076467 14079943 ECH
Trre11g01434 11 14076467 14079943 Trre1g05498 1 60472848 60473796 PCT