Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01421 ATGGGAAGAGGGAGAATAGTTTTGGAGAGAATAGAGAATAAGATCAATAGGCAAGTAACATTCTCAAAGAGAAGGAGTGGATTGTTGAAGAAAGCTTTTGAGCTTTGTGTGCTATGTGATGCTGAAGTAGCACTTATCATCTTTTCAAGCCGTGGCAAGCTTTTTCAATACAGCAGCACAGATATTAACAAAATCATTGAGAGGTATCGTCAATGTCGTTACAACAAGTTACAAGTTGGCAATTCATTAGGACACAATGACTCACAGAATTTATACCAGGAGTACTTGAAACTAAAGGCAAGATATGAATCTCTTGACCGAAAGCAGAGGCAATTTCATGGGGAAGAACTTGAGGAACTTAGCATGAAAGAATTGGAGAGCCTCGAGGAACAACTAGAATTAACGCTCACACAAGCTCGACAACTACAAATGAAGAAGCTCTTTGCACGAGCAGAGGAACTACGTGAAAAAGTACATAACTTGGAGGAGCTTAACAAAAATTTGGAGCCCAAGGGAATAGACGAATATTCAAACATCCTTGCTGACAAAACAAGTCATATACAATTGGAAGCTATAGAAGCCAATCATTTTGAATAA 597 0.3853 MGRGRIVLERIENKINRQVTFSKRRSGLLKKAFELCVLCDAEVALIIFSSRGKLFQYSSTDINKIIERYRQCRYNKLQVGNSLGHNDSQNLYQEYLKLKARYESLDRKQRQFHGEELEELSMKELESLEEQLELTLTQARQLQMKKLFARAEELREKVHNLEELNKNLEPKGIDEYSNILADKTSHIQLEAIEANHFE 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01421 198 Gene3D - 13 104 IPR036879 GO:0003677|GO:0046983
Trre11g01421 198 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Trre11g01421 198 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 162 - -
Trre11g01421 198 Coils Coil 88 108 - -
Trre11g01421 198 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Trre11g01421 198 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre11g01421 198 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Trre11g01421 198 Coils Coil 122 171 - -
Trre11g01421 198 FunFam MADS-box transcription factor MADS-MC 13 83 - -
Trre11g01421 198 ProSiteProfiles K-box domain profile. 88 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre11g01421 198 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre11g01421 198 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre11g01421 198 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre11g01421 198 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Trre11g01421 198 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01421 Trre-Chr11 13893958 13897709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01421 1 171 MADS-box Gene Family AT2G45650 54.971 3.98e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Trre11g01421 K-box 3.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01421 K09264 - gmx:100793681 246.128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01421 11 13893958 13897709 Trre11g01421 11 13893958 13897709 ECH
Trre1g05482 1 60329545 60338744 Trre11g01421 11 13893958 13897709 PCT