Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01419 ATGGGTAAGGAAAGGTATTGGGTTGGAAAATCTTACAAAAAAAGTGTTATAGTTGAAGAAAATGAAACAAAAACAACACCAACACCACCTAGTGGTTGCATGTGTGCTGTTTTTCAATTCTTTGATTTTCATCCATTTCATTTTCCTAACACCATAAATCATCAACAAGAAGTCACTTCTTCTTGCATCTCAAAAGACCACACTACTACTACTACTACTGTCCCAAAAGGTGCTGAAGCTCCTAGGAATAGCTTGGAATCTAAAGATGGAACAGTTTCAGCTTCTCTTTCAAAAGAAGAAAATTTTAAAATTCCAATGAATATACAAATTAAAACAAAAAGGAGCAATGGTGGAAATTTGACCGATTTGTCCTCAGAAATAAGCACTTCACCAGGAGCAAAGACACCAACTTTAGTTGCAAGATTAATATGGAGGAAAATTGATGAGAATAATTTCAAAAGTCCAAGTCAACATGCAAAACAAATTGTTAAACAAGTTAAGGAAAGTGTTGCTAGTAGAAAAGTTGGTCAAGACATTACCAACACTTTCAAAAACAAGCAGGATATCGGTACTCAACAAAATTTTAGAGCATCGGATAATTTACTAGCCAAAGATCAATTACAAACAAGAGAAGAAATTTTAGGACTATTAAGAATCAAGAAAAGTCCTAAAACAACAACATTGAAAGATTCAAATCCTTCATCATGTTCACAAAGGATTAGATTCATAGAAAACAAACACAAGCCAAACACAACATCAAAAGATAAAAACACAAAACCAAAGGCTTATGCATTGAAAGAAGAGCAAGAATCAAGGGACAAGAAATTGGTCACAAAATGTAAGAAAGATACAAATGAAAAGTTTAGTAGCTCAAGATTCAAAAGGCCTCCACAAACATCAGATATAAACATTTGTCCAACATCAAATTCTAGAGCCAATGACATTAAAAGTAATGTAAAAAGCAAGAAAACTCAGTCATTATCAAGCAATCTCCTCAACAATATCAATGTGGTCCAAAATGCTCTCTCTATTAAGACAGAGTCTTCTCCTCTGGCAACCAAAATTCATCAGAAACAGTCACAGGTGTCTGAAATTCAATGTTGTTTGAGCCAAAGGTACAAACAAGAAGGAACAGCCACACTCTCAACCCAAGAAACAAGAACCAACGTAATTGAAGACAAATTTAACGGTGTCTCTACCATAGAAACTCACAAAACAGAATTTCAGTACATCACAGAAATCTTAAACAAACATGTCACAACCACAACAAGAAAGAATGTGTCTTTTAACACATGGTTCTCTACAAAACATCCACTTGACCCATCAATCTTCAACCACCTTGAACACAATTTCGACAATAAAGATCGAAACTTTACAACAAAAAATCAACTGGGTCATCGTTGGAATCGAAAATTGATGTTCGATTTGGTGGATGAAGTTTTACTAGAGATTTTGAAGCAAAAGTTTAGGGAAAAAAAGCTATGTTTTTCGCAACGGTTTTGTGACCGGTTGACAATTACCGAATTAACGGAGAGAGTGTGGAATAGGGTAGGAGAGTTTCCATGTGCCAAATGTGAAGTTTTGGATGATATTGATAATTTGATTGAATCAGAAGATATGAAGAAATTGATCAATGTTGAACATGAAGAAGAAAAAGAAGATTTGGTGATGGAGATTGAAGGCAACATATTAGACACATTGATGTATGAACTATTTTGGTTATGA 1725 0.3426 MGKERYWVGKSYKKSVIVEENETKTTPTPPSGCMCAVFQFFDFHPFHFPNTINHQQEVTSSCISKDHTTTTTTVPKGAEAPRNSLESKDGTVSASLSKEENFKIPMNIQIKTKRSNGGNLTDLSSEISTSPGAKTPTLVARLIWRKIDENNFKSPSQHAKQIVKQVKESVASRKVGQDITNTFKNKQDIGTQQNFRASDNLLAKDQLQTREEILGLLRIKKSPKTTTLKDSNPSSCSQRIRFIENKHKPNTTSKDKNTKPKAYALKEEQESRDKKLVTKCKKDTNEKFSSSRFKRPPQTSDINICPTSNSRANDIKSNVKSKKTQSLSSNLLNNINVVQNALSIKTESSPLATKIHQKQSQVSEIQCCLSQRYKQEGTATLSTQETRTNVIEDKFNGVSTIETHKTEFQYITEILNKHVTTTTRKNVSFNTWFSTKHPLDPSIFNHLEHNFDNKDRNFTTKNQLGHRWNRKLMFDLVDEVLLEILKQKFREKKLCFSQRFCDRLTITELTERVWNRVGEFPCAKCEVLDDIDNLIESEDMKKLINVEHEEEKEDLVMEIEGNILDTLMYELFWL 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01419 574 Pfam Domain of unknown function (DUF4378) 407 570 IPR025486 -
Trre11g01419 574 PANTHER LOW PROTEIN: M-PHASE INDUCER PHOSPHATASE-LIKE PROTEIN 148 572 - -
Trre11g01419 574 MobiDBLite consensus disorder prediction 224 261 - -
Trre11g01419 574 MobiDBLite consensus disorder prediction 226 240 - -
Trre11g01419 574 MobiDBLite consensus disorder prediction 291 313 - -
Trre11g01419 574 MobiDBLite consensus disorder prediction 287 313 - -
Trre11g01419 574 MobiDBLite consensus disorder prediction 68 94 - -
Trre11g01419 574 MobiDBLite consensus disorder prediction 241 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01419 Trre-Chr11 13881190 13884745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01419 153 570 TRM (TON1 Recruiting Motif) Superfamily AT5G62170 30.822 7.24e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01419 - - mtr:11427611 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01419 11 13881190 13884745 Trre11g01419 11 13881190 13884745 ECH
Trre11g01419 11 13881190 13884745 Trre1g05478 1 60305024 60307313 PCT