Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01404 ATGCAAGAGTCAGAAGAAGAAAATCATGACCTTCCTCAAAAGTCAAAGCCACTAGAGGAAAATGGATTTTCCATGGATTTTGATATTGACTTTGAAAATTCATGGCCTTTGGATCATTTATCTAACACTATGTATCCTTTTCTTTTATCAACTACCTCTGAACAACAGCACTTTTCTCCTATTTGGACTTTTTCTGATGCTGAAGATGACAGCATTGCAGCTTCAGGTAAAAAAACAAAGACAGTAACGGAAAACCGAGTCGAAAATGACGACAAGAAAAAACATGTGACACACCACCATGTAGAAGCTTTTCCACCTTTACAAAATCCACATGGTTATTGTCTAATCAAGGAAAGAATGACACAAGCTCTTAGGCAGTTCAAAGAGTTAACCGAACAGAATGTTCTAGCTCAAGTTTGGGCGCCGGTGAGGAACGGAAATCGGTATAAGCTCACAACTTCAGGCCAACCATTTGTTCTTGATCCACATAGTAATGGACTTCATCAGTATAGAACAGTTTCTTTGATGTATATGTTTTCTGTTGATGGAGAAAACGATGAAATTTTAGGGCTTCCCGGTAGAGTTTTTCAGCAGAAGTTACCGGAATGGACTCCGAATGTTCAGTATTATTCTAGTAAAGAATATTCAAGGCTAAATCATGCTTTACATTACAATGTTCGTGGAACTTTGGCGTTGCCGGTGTTTGAACCTCCGGGACAATCGTGTGTTGCTGTGTTGGAATTGATTATGACTTCACAGAAGATTAATTATGCTCCTGAGGTTGATAAAGTCTGCAAAGCACTTGAGGCAGTAAATTTGAGGAGTTCAGAGATTTTGGAGAATCCATACAGTCAGATTTGTAACGAAGACCGACAGAATGCATTATCCGAGATTTTGGAGATATTGACAGTGGTGTGTGAAACTCATAATTTACCTTTGGCACAAACTTGGGTTCCCTGTAGGCATAGAAATGTTTTGGCTCATGGTGGCGGTCTTAAGAAAAGCTGCTCGAGTTTTGACGGTTATTGTATGGGACAAGTTTGCATGTCTATAACCGAGGTAGCATTTTACGTAATAGATTCTCATACATGGGGTTTCCATGATGCATGTGTTGAGCATCACTTACAACAAGGTCAAGGAGTTGCCGGTAGAGCTTTTTTGTCGCAGAATATGTGTTTCTGTGAAAACATTACTCAATTCTGCAAAACCGATTATCCTTTAGTACATTACGCTCTCATGTTTGATTTAACAAGCTGTTTTTCGATCTGTTTACAAAGTTCTCATACCGGAAATGATGAATATGTACTAGAGTTTTTTCTGCCTCCTAGTATCAATGAATTTTGTGAACATAAGGCTTTGTTGGGATCGATATTGGCAACAATGAAACAAAATTTCCAAAGTCTTAAGGTTGCTTCTGGTTTTGAACTTGAGGAGAATGGATCAATTGAAATTGTTGAAATATTGAATGGAAGAGTTCATTCGAGGCTTGAATCTGTTCCGATTATTCAATCTACAAAATTATCAACTAGACATGATGATGCCTCGCCGAATATGGACGAGGGAGTGCTTCCATTAGATCCATTACTACAGAAAATTGTCACAAGTTTTGATGATATAAATGATAGAGGGATTCTTGATGATAATGCAGGTGGAAGCATTGATCGGATCTTTTCCTTGGAGACAAAAACCAAAAAGAATACCTCCCAAAGAAAACGCGGAAAAGCTGAGAAATCAATTAGTCTTGATGTGTTGCAAAACTATTTCAGTGGGAGTCTGAAGGATGCTGCAAAGAGCTTCGGAGTTTGTCCTACTACGATGAAGCGAATCTGCAGGCAGCATGGAATATCTCGTTGGCCATCTAGAAAGATAAAAAAGGTTAACCGTTCCTTATCGAAGCTCAAGTGCGTTATTGAATCTGTCCATGGTGTTGAAGGAGCATTTGGGTTGAATTCTCCAACTACAAGTCCACTCGATATTGCTTCCGGTTCCTTTAATCAACCTTCTACTTCAAACAAGTTCGAACACCAAACCTCATTAAGCATAATGCCATCAGAAACTAAGATGAACAAAAATGATTTCGATGCTTCGAAATCACAACCTCAAGAACCATTTATAGGAATGCTAATTGAAGGTGCAGATAGTTCTAAAGACATGAAAAATATGTATCCTTTAGCAGATACTGTTTTGGAGGATCAAATCCTCGAAGCTTCAAGGACTAATCCTCCATGTTTTGATTTTGCTCCTTTAGCTCAGAAAGAAATGAAGATTGTGACTATTAAGGCAACATATAGAGATGATATAATAAGGTTTAGGGTGTCTTTGAACTGTGGCATTGTGGAATTGAGAGAAGAAATTTCCAAAAGATTGAAACTAGAGGTAGGGACATTTGATATCAAGTATTTGGATGATGATCAAGAGTGGATTTTGGTGGCATGTGATGCTGACTTGCAGGAGTGCATGGATGTTTTAACATCATCAGGCAGCAATACTATTAGGCTTGTTGTGCATGATATTGTGTCCATTCTTGGAAGCTCTGTTGAGAGCTCAGTGTAG 2553 0.385 MQESEEENHDLPQKSKPLEENGFSMDFDIDFENSWPLDHLSNTMYPFLLSTTSEQQHFSPIWTFSDAEDDSIAASGKKTKTVTENRVENDDKKKHVTHHHVEAFPPLQNPHGYCLIKERMTQALRQFKELTEQNVLAQVWAPVRNGNRYKLTTSGQPFVLDPHSNGLHQYRTVSLMYMFSVDGENDEILGLPGRVFQQKLPEWTPNVQYYSSKEYSRLNHALHYNVRGTLALPVFEPPGQSCVAVLELIMTSQKINYAPEVDKVCKALEAVNLRSSEILENPYSQICNEDRQNALSEILEILTVVCETHNLPLAQTWVPCRHRNVLAHGGGLKKSCSSFDGYCMGQVCMSITEVAFYVIDSHTWGFHDACVEHHLQQGQGVAGRAFLSQNMCFCENITQFCKTDYPLVHYALMFDLTSCFSICLQSSHTGNDEYVLEFFLPPSINEFCEHKALLGSILATMKQNFQSLKVASGFELEENGSIEIVEILNGRVHSRLESVPIIQSTKLSTRHDDASPNMDEGVLPLDPLLQKIVTSFDDINDRGILDDNAGGSIDRIFSLETKTKKNTSQRKRGKAEKSISLDVLQNYFSGSLKDAAKSFGVCPTTMKRICRQHGISRWPSRKIKKVNRSLSKLKCVIESVHGVEGAFGLNSPTTSPLDIASGSFNQPSTSNKFEHQTSLSIMPSETKMNKNDFDASKSQPQEPFIGMLIEGADSSKDMKNMYPLADTVLEDQILEASRTNPPCFDFAPLAQKEMKIVTIKATYRDDIIRFRVSLNCGIVELREEISKRLKLEVGTFDIKYLDDDQEWILVACDADLQECMDVLTSSGSNTIRLVVHDIVSILGSSVESSV 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01404 850 PANTHER PROTEIN NLP8 54 849 IPR045012 GO:0003700
Trre11g01404 850 SMART PB1_new 756 838 IPR000270 GO:0005515
Trre11g01404 850 MobiDBLite consensus disorder prediction 1 20 - -
Trre11g01404 850 ProSiteProfiles PB1 domain profile. 756 838 IPR000270 GO:0005515
Trre11g01404 850 ProSiteProfiles RWP-RK domain profile. 563 646 IPR003035 -
Trre11g01404 850 SUPERFAMILY CAD & PB1 domains 754 841 - -
Trre11g01404 850 MobiDBLite consensus disorder prediction 1 16 - -
Trre11g01404 850 Pfam RWP-RK domain 579 626 IPR003035 -
Trre11g01404 850 CDD PB1_NLP 757 837 IPR034891 -
Trre11g01404 850 Pfam PB1 domain 757 837 IPR000270 GO:0005515
Trre11g01404 850 Gene3D - 753 837 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01404 Trre-Chr11 13707683 13712382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01404 171 849 NLP Transcription Factor Family AT1G64530 55.337 0.0 750
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Trre11g01404 PB1 7.4e-20 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01404 - - mtr:25479714 1472.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01404 11 13707683 13712382 Trre1g05381 1 59512470 59516722 PCT