Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01392 ATGCCACTGCCAGTTGCAAAACTCAAGGCCTCTGACACTCCAGATGTCATGCGAACAGAAGACGGAATAGATACTATTATCAGACAAGCAATTGGAAAAGAACCTTTATTTTATTTTCCAAGGGGCGGTGACAACCCGGGACAGTTGATTCAATTACTCAATACTTTTGATCAGCATGGTGTTACCAATATTTATTCAGAATATCCGGGGTGGCCTTTGCTCTATCCTCTGAAGGCTCCATCTGACAAATGTGAGAAATGTTCTAAAGAGTTTTGCTCCACCATTAACTATAGAAGACATTCACCTGTACATCACCGATTCAGAAAGCTTGATAAGGATACTTCCAAAACCAGGGATCTTTTAGGGGCATATTGGGATAAGCTCTCTGTAGAAGAGGCGAAGGAAGTTCTATCTTTAGAAAATGTGATGCTGGAGGAAGTTCCAGGGTCTACGGTTTTGGATGCATTGATCACTCTTAATCAAAAACAAGGATTTTTTTTACTTCCGCAATGTTATATGAGGGCTGGTGTTGCCCTATTGGATATTCTTCAATCTAAACCCTCCAGTTTACCTATACCTTCCCGGGAATTGTTCAGTATCCTAGATGATGCTAGTGAAAGAACATTTTTATTGGGGACAGCAGTGTCAATGCAAAAACATGTTTTCCATGGAGGGTCTGGAAAAATTGGACTTCAACCCAAAAACATAGTTGCTTGCATAAGCTTCTTGCTAGAACAGATATTGGTTAAGGCATGGCTTGCTGACAAGGATGCTGAAGCACTGAGGTGCCAGAAACAATTGGTGGAGGAGGAAGAAGCTGCTCAGAAAAGACAAGCTGAGATTTTGATGAGGAAACGCCAGAAAAAGCTTAGACAAAAAGAGCAGCGGGCTAGGGAACAAAGGATCAAGCTTGAGGAAGAAACTAAAGGGAATGCTGACAGTATACTGAAGACTCTATCATCAGCAGAATGTTTTTTGGATACAAATGATTTTGAAGCTCAAAATCCAGAGGAGTTTACAAATAACACTCCATCACATGTACCTTTTCAATTCCCTGATGTCAATGAAGGAAAAGATGGGGATACTCGATTTGGACATGCTTTTGGCTCGGATCAGATTATTGGACAGTCAGAACGTGGACTTGATCATCCGTGCAGAGCAGATGCTAGTTGGCAGGAGCCTTCAAAATCCCCCCAACGCACAGTAGTCAGTGATCTGCATACAAACAAGAATCCTCCAATTTTAAATCTTGATGAAGTCATTCAGAGTTGTGGAACCCGCAATGATCAGAGGGCAGATGCTATAGTTAATGCTGGTATAGCATGTAATAGGAAGCCAACACCTGAAATTGACAGGATGGTTTTAAAAACCATAGCAAAGACTGAACCAGACACAGTTAATCATGAAGTTTTGATCGGATCTATATCCGTCAATCTTGGAAAATGCAGCCAATCAGAGGGTAATGTGGTGGTATCTCGAGACTGCTCAGTTGAGAATGTGGATAACCAGAATAGTTCTCAGGATAAACCAAAGAAACCTGATTTAGTCAAGAGTGGAAACAATCAAGCAGCAGTTAAGATTTCAACACCAGTTAGTCAGTTTGAAACTAAAGATTCATTTCCAGTTCAAAATCATGGGACAGAAGTTGATGCAGGTAGTAGAGATGAAGGTTGTCAAAACTCGTCAAGGTTGGCTAGTGATGGTAGCGATGTTGGTTTTAAAATGAAAATCTCCAATCGCGAGGGTCAGTTAGATCCAAGAAAGTTCCAGTTTAATATCCAGGCTGCAAAAGCCTTTCTTGCACAAAGATGGGAAGAAGCTATATCATCGCATCATGTGAAATTGGTTATTTCCCTTGACTCTGAACCTCCTGGTAGCCAGGAGATACAGGATTTTAAGGTAGCAGCAGCATATGGATCTTCTGATGGTGATGATGGAAGCAGCAACATTCCGGCAAAAACAGTTAATAAGTTGCTTTCAACTACCAAAGCTTCTAAGTCCAAGCGCAGAGGGAAGTCTAAAAAGGGAACCGATTACAAGAATAATCCTACAGAGAAAATAGCCTAA 2067 0.4112 MPLPVAKLKASDTPDVMRTEDGIDTIIRQAIGKEPLFYFPRGGDNPGQLIQLLNTFDQHGVTNIYSEYPGWPLLYPLKAPSDKCEKCSKEFCSTINYRRHSPVHHRFRKLDKDTSKTRDLLGAYWDKLSVEEAKEVLSLENVMLEEVPGSTVLDALITLNQKQGFFLLPQCYMRAGVALLDILQSKPSSLPIPSRELFSILDDASERTFLLGTAVSMQKHVFHGGSGKIGLQPKNIVACISFLLEQILVKAWLADKDAEALRCQKQLVEEEEAAQKRQAEILMRKRQKKLRQKEQRAREQRIKLEEETKGNADSILKTLSSAECFLDTNDFEAQNPEEFTNNTPSHVPFQFPDVNEGKDGDTRFGHAFGSDQIIGQSERGLDHPCRADASWQEPSKSPQRTVVSDLHTNKNPPILNLDEVIQSCGTRNDQRADAIVNAGIACNRKPTPEIDRMVLKTIAKTEPDTVNHEVLIGSISVNLGKCSQSEGNVVVSRDCSVENVDNQNSSQDKPKKPDLVKSGNNQAAVKISTPVSQFETKDSFPVQNHGTEVDAGSRDEGCQNSSRLASDGSDVGFKMKISNREGQLDPRKFQFNIQAAKAFLAQRWEEAISSHHVKLVISLDSEPPGSQEIQDFKVAAAYGSSDGDDGSSNIPAKTVNKLLSTTKASKSKRRGKSKKGTDYKNNPTEKIA 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01392 688 Coils Coil 258 310 - -
Trre11g01392 688 MobiDBLite consensus disorder prediction 499 521 - -
Trre11g01392 688 MobiDBLite consensus disorder prediction 642 662 - -
Trre11g01392 688 MobiDBLite consensus disorder prediction 541 570 - -
Trre11g01392 688 ProSitePatterns Zinc finger C2H2 type domain signature. 84 105 IPR013087 -
Trre11g01392 688 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 4 680 - -
Trre11g01392 688 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 109 IPR013087 -
Trre11g01392 688 MobiDBLite consensus disorder prediction 638 688 - -
Trre11g01392 688 MobiDBLite consensus disorder prediction 377 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01392 Trre-Chr11 13638607 13645775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01392 21 687 C2H2 Transcription Factor Family AT4G25610 37.666 1.75e-116 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre11g01392 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01392 - - tpra:123909032 963.37