LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre11g01389	ATGGAAACCGCAACCACCCTCACCGGACTCCTCCAAGCCGTCGCCAAACAATTCCCTTCCCGACGTGCTATCTCCGTCGCCGGAAAACTCGATCTCACTCACTCTCATCTCAATCAATTAGTCGAATCCGCCGCTAACCATCTCATCTCCGTCGGAATCAAACCTAACGACGTCGTCGCTCTCACCTTCCCTAACACCGTCGAGTATGTTATATTATTTTTGGCTGTTATACGAGTACGAGCGACGGCGGCGCCGTTAAACGCGGCTTATACATCAGAAGAGTTTGAGTTTTATTTATCAGATTCTGAATCGAAGCTTCTATTAACGCCGTTAGAAGGTAACGAACCGGCTCAAACCGCAGCTACAAAGCTCAAAATTCAACTCGGTTCAGCTTCGCTCATTAAAACAATTGAAGAAGATGAAACTAAATTTTCATTTTCAATCTCGTTGAACAAATCCGAGTCAGAGTTAAATTCAGTTAACTCAGTTAACTCGGTTACTAAACTCATTAACGAACCGTCCGACGTGTCACTTTTTCTCCACACATCAGGAACAACGAGTCGACCTAAGGGGGTTCCACTGAGTCAACACAACTTAGTTTCATCGGTTAGAAACATTGAATCGGTTTATCGACTCAGTGAGTCAGACTCGACGGTTATTGTTCTTCCGCTTTTTCACGTTCACGGGTTAATTGCTGGATTACTGAGTTCACTTGGTGCCGGAGGTGCGGTGGCGTTACCATCGGCGGGAAGATTCTCGGCGTCGACGTTTTGGAAAGATATGATTCAACACAATGCGACTTGGTATACTGCGGTTCCTACTATACATCAGATTATACTTGATCGTCATTTGAATAATCCTGAACCGGTTTACCCGAGACTCCGGTTTATTAGAAGCTGTAGCGCTTCCTTGGCACCGGTTATTCTAGGTCGTTTAGAGGATGCCTTTGGGGCACCAGTTTTGGAGGCATATGCTATGACAGAGGCAACTCATTTGATGGCTTCAAATCCTTTGCCACAAGACGGGGCCCACAAAGCTGGGTCGGTTGGTAAACCAGTGGGTCAAGAAATGGCTATATTGGATGAATCGGGTCGGATTTTGGAGAATGAAGTTAATGGTGAAGTGTGTATTAGAGGAGAAAATGTTACAAAAGGGTATAAGAATAATGAGGAAGCTAATAAGGCAGCATTTTTGTTCGGCTGGTTTCATACTGGTGATATTGGTTACTTTGATTCTGATGGCTATTTGCATCTTGTGGGTCGGATTAAAGAGCTCATAAACAGAGGAGGAGAGAAAATATCACCAATAGAAGTGGATGCTGTTCTTCTATCTCATCCTGACGTAGCACAGGCAGTTGCTTTTGGAGTGCCAGATCAGAAATATGGTGAAGAGATACATTGTGCAATCATACCAAGAGAAGGATCTAACATTGATGAGGCAGAGGTGCTAAGATTTTGCAAGAAGAATCTCACATCTTTTAAAGTCCCCAAAAAGGTTTTCCTTACTGATTCTTTGCCAAAGACAGCTACAGGCAAGATTTTGCGTCGTCTCGTGGCAGAACACTTTATCTCTCAAGTTTGA	1581	0.4409	METATTLTGLLQAVAKQFPSRRAISVAGKLDLTHSHLNQLVESAANHLISVGIKPNDVVALTFPNTVEYVILFLAVIRVRATAAPLNAAYTSEEFEFYLSDSESKLLLTPLEGNEPAQTAATKLKIQLGSASLIKTIEEDETKFSFSISLNKSESELNSVNSVNSVTKLINEPSDVSLFLHTSGTTSRPKGVPLSQHNLVSSVRNIESVYRLSESDSTVIVLPLFHVHGLIAGLLSSLGAGGAVALPSAGRFSASTFWKDMIQHNATWYTAVPTIHQIILDRHLNNPEPVYPRLRFIRSCSASLAPVILGRLEDAFGAPVLEAYAMTEATHLMASNPLPQDGAHKAGSVGKPVGQEMAILDESGRILENEVNGEVCIRGENVTKGYKNNEEANKAAFLFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHPDVAQAVAFGVPDQKYGEEIHCAIIPREGSNIDEAEVLRFCKKNLTSFKVPKKVFLTDSLPKTATGKILRRLVAEHFISQV	526

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre11g01389	526	Gene3D	-	422	524	IPR045851	-
	Trre11g01389	526	FunFam	4-coumarate--CoA ligase 2	424	525	-	-
	Trre11g01389	526	Pfam	AMP-binding enzyme C-terminal domain	437	512	IPR025110	-
	Trre11g01389	526	FunFam	Peroxisomal-coenzyme A synthetase	6	421	-	-
	Trre11g01389	526	CDD	FACL_fum10p_like	19	520	IPR045310	GO:0016874
	Trre11g01389	526	Gene3D	-	1	421	IPR042099	-
	Trre11g01389	526	PANTHER	ACYL-COA SYNTHETASE	5	523	-	-
	Trre11g01389	526	SUPERFAMILY	Acetyl-CoA synthetase-like	5	524	-	-
	Trre11g01389	526	Pfam	AMP-binding enzyme	12	428	IPR000873	-
	Trre11g01389	526	ProSitePatterns	Putative AMP-binding domain signature.	179	190	IPR020845	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre11g01389	Trre-Chr11	13611843	13617666	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre11g01389	5	526	Monolignol Biosynthesis Gene Families	AT4G05160	29.554	1.20e-55	193

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre11g01389	K22133		-	gmx:100817853	818.535

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Trre11g01389	11	13611843	13617666	Trre11g01389	11	13611843	13617666	ECH