Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01373 ATGGACTTTGATTATGCTCGCTACATGTTGACAAAAGGGGCTAAAGAATATAATTTCTTAGAGTATGAGGTTGGGGTTCCAAAGGTGTGTGTGGAAACTACTCGTGGTGTGGAAATTGAGGTAAACAACAAGTCAGACTGGGGCTATGTCGGTGATGCTATGGTTGTTTATGATCAGCTCATATCTAATCGCCCTAATGACTTTAGTGGATACTTAGCTAAGATTCAGACAAAGAGAAACAAATTGAAAGGAATTACTAGTGAGGGCTCGATTTCAGACCAAGGCGAATTCAATTGTGAGGTACCAAGTGACCAAAAGCTGCCATCTCTTTATCTCTTAGACAATATTGTTGATCCTCCTGCCCATTCAAATATGAGGCATCTTTTTGGGACTTGGAGAGGAGTCTTTCCTCCTCAGACCCTTCAGATAATTGAGAAGGAACTCGGCCTCACTCCAGCAGTCAATGGTTCAGCTTCTGCCGCCCTTAGAAGTGATTCTTAG 501 0.4251 MDFDYARYMLTKGAKEYNFLEYEVGVPKVCVETTRGVEIEVNNKSDWGYVGDAMVVYDQLISNRPNDFSGYLAKIQTKRNKLKGITSEGSISDQGEFNCEVPSDQKLPSLYLLDNIVDPPAHSNMRHLFGTWRGVFPPQTLQIIEKELGLTPAVNGSASAALRSDS 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01373 166 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 100 161 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Trre11g01373 166 SUPERFAMILY ENTH/VHS domain 100 149 IPR008942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01373 Trre-Chr11 13439032 13441565 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01373 100 161 C2H2 Transcription Factor Family AT4G04885 40.909 1.17e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01373 K14400 - gmx:100807857 104.76