Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01359 ATGCTTAATTTTCACTTCAAACACTTCACTTCCCTCACAACTCTAATTCCATTCCTTCTACTTCTATTCATAAACCATGTTGAATCACAAGGATCCATGCAACCGGTTCCGACCGATATCTCTACACATAGATGGCAACCTTCCCTTGCAATCACAGGAGGTGCCTTACTTTGTCTATTTCTATTCTTAGGAATCATCTTTTGTTATGTCCGGAATTGCGTCGAATCACGCATCATAGTCAGAGATTGTCCATGTTCATGTTCACAAGGTATCAACAAAGAACTCCTCAACACTTTCCCTATCCTTTTTTTCTCAACAATCAAGGATCTTAAAACAGATAAAGGACCATTGGAATGTGCAGTTTGTTTAACAGATTTCAAAGAAAATGATACCTTAAGATTACTACCTAAATGCAACCATGTTTTCCACCCTCAATGCATTGATTCATGGTTAGCTTCACATGTCACATGTCCGGTTTGTCGGGCAAATCTTAACCAAGATTCTTGTCAAGTTGCAGTGATCATTCCAGCTCATTTCAACAATGACCAAACGTGTGAAGAAAGTCCCGAAACCGTGCCCGAAATCACACTAAAAACCGTACCCGAAATCACTCAAAATAATGATTCCAGTGACCAAAACCAAAACCCGAACCAAATTTGCGATGAAATGAACAAAGGAGAAAGTATCAATTGTGATGATGGGCATGCATCAAAATTGAAACTTTCACGGTCAAATTCAACCGGACATTCATTGGTTGAACAAGTGACATGTATGGAGAGACACACACTAATGTTACCAGAGGATGTTAGAAGGTACATTTTGGTTAACTATAGAAAAAGTTTTCAACTTTCTATGAACAACAACATGGTTAAAGGGTTATGTTGGAGTGATAGTGAAGAGAGCAGTGAAGGGAAGAAGATCAATAATGATGCAAAGGAAAATCTTAACAAAGTGAAGAATGGTGATGTTAAGGTTGATTCAATAAATGGGTCGTTGTTGAATTTTGATGGGGTTATGGGAAATTTTTGGTATATGAATGATGAAGCAGAGAAGGTTGAAATGGAAGAAAAGTAA 1074 0.3771 MLNFHFKHFTSLTTLIPFLLLLFINHVESQGSMQPVPTDISTHRWQPSLAITGGALLCLFLFLGIIFCYVRNCVESRIIVRDCPCSCSQGINKELLNTFPILFFSTIKDLKTDKGPLECAVCLTDFKENDTLRLLPKCNHVFHPQCIDSWLASHVTCPVCRANLNQDSCQVAVIIPAHFNNDQTCEESPETVPEITLKTVPEITQNNDSSDQNQNPNQICDEMNKGESINCDDGHASKLKLSRSNSTGHSLVEQVTCMERHTLMLPEDVRRYILVNYRKSFQLSMNNNMVKGLCWSDSEESSEGKKINNDAKENLNKVKNGDVKVDSINGSLLNFDGVMGNFWYMNDEAEKVEMEEK 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01359 357 CDD RING-H2_EL5-like 118 161 - -
Trre11g01359 357 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Trre11g01359 357 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 35 268 - -
Trre11g01359 357 SUPERFAMILY RING/U-box 118 167 - -
Trre11g01359 357 SMART ring_2 119 160 IPR001841 -
Trre11g01359 357 FunFam E3 ubiquitin-protein ligase ATL6 81 167 - -
Trre11g01359 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 168 IPR013083 -
Trre11g01359 357 Pfam Ring finger domain 118 161 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01359 Trre-Chr11 13306820 13307990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01359 11 309 Rapid Response to Elicitors AT3G05200 32.492 1.15e-49 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01359 K10664 - gmx:100782532 275.404