Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01355 ATGGCTCCGGCGCCACCACCGGTGGAAAACAACGCCGAATCCACCACAACCGTCACAACCACCCCTATCTTAGAGTCTCAGAGATCTATTCCTACGCCGTTTCTCATCAAAACCTATAACCTCGTTGAAGATAAATCCATCGACGATGTTATCTCTTGGAATGAAGATGGATCCACCTTCATCGTTTGGAACCCTACCGTTTTCGCTAGCAATTTGCTTCCAAAACATTTCAAACACAACAATTTCTCTAGCTTCGTTCGTCAACTCAATACTTATGGATTTAGAAAAGTAGTACCTGATCGGTGGGAATTTTCAAACGATTGTTTCCGAAGAGGTGAGAAACGGCTTTTATGCGAGATTCAACGGCGGAAGATCTGTTCTCCGGCGGTTTCACCGTCGCCGGCGTCTGTTTCTGTTTCTGCTACTGCAACGGTGGAAACAACGACTCCGACAGTTACGATTCCTTCACCGATGCCGATTACTGTTATACCGATGGCGATGCCGATGGTTTCACCGTCAAACTCCGGTGAAGAACAAGTGATATCTTCGAGTTCGTCTCCGCCGCGAGCGCCAGCAGAGCTTCTCGACGAGAACGAGAGATTGAGAAAAGAAAACGTTCTGTTGAATAAGGAACTTGCTGAGATGAGATCGCTTTGTAACAATATATACACTCTCATGTCAAGTTATGCAAACAATAGCAACAACGGTAACAATCAATCGGACGGTGGAGCGCAAGGAAGCAGAGAGTCCGGTATGACGGCGGTAAAACCGTTGGATTTGTTACCGGCGGAGGTAAAACGGAGCTCCGGCGTTGAAATGAATCCAAAGCTATTCGGTGTTACGATTGGAACGAAGCGAATTAGAGAAAACGGTTGTGAAAATGGTGAAAGAGGAGAAGATACACTGTTGCGGCTACATCAACCAGTTACTACGGACGTGAAATCTGAACCGTTGGATTGTCAGGAACAACGTGATAATAATGATGAAACGTTGTGGTTGAATCAATGTCGTAGAAAGAATCAGAGTTTATGTAAATGA 1038 0.4547 MAPAPPPVENNAESTTTVTTTPILESQRSIPTPFLIKTYNLVEDKSIDDVISWNEDGSTFIVWNPTVFASNLLPKHFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDCFRRGEKRLLCEIQRRKICSPAVSPSPASVSVSATATVETTTPTVTIPSPMPITVIPMAMPMVSPSNSGEEQVISSSSSPPRAPAELLDENERLRKENVLLNKELAEMRSLCNNIYTLMSSYANNSNNGNNQSDGGAQGSRESGMTAVKPLDLLPAEVKRSSGVEMNPKLFGVTIGTKRIRENGCENGERGEDTLLRLHQPVTTDVKSEPLDCQEQRDNNDETLWLNQCRRKNQSLCK 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01355 345 SMART hsfneu3 30 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre11g01355 345 MobiDBLite consensus disorder prediction 1 20 - -
Trre11g01355 345 Coils Coil 198 218 - -
Trre11g01355 345 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre11g01355 345 PRINTS Heat shock factor (HSF) domain signature 34 57 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre11g01355 345 PRINTS Heat shock factor (HSF) domain signature 85 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre11g01355 345 SUPERFAMILY "Winged helix" DNA-binding domain 31 123 IPR036390 -
Trre11g01355 345 MobiDBLite consensus disorder prediction 172 189 - -
Trre11g01355 345 FunFam Heat stress transcription factor B-4 26 124 - -
Trre11g01355 345 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 29 232 IPR027725 -
Trre11g01355 345 ProSitePatterns HSF-type DNA-binding domain signature. 73 97 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre11g01355 345 Gene3D - 26 124 IPR036388 -
Trre11g01355 345 Pfam HSF-type DNA-binding 34 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre11g01355 345 MobiDBLite consensus disorder prediction 171 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01355 Trre-Chr11 13256913 13258050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01355 26 344 HSF AT5G62020 48.521 1.87e-90 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre11g01355 HSF_DNA-bind 7.6e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01355 K09419 - gmx:100812267 380.178