Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01354 ATGGTCCGTTCACCGAGTCACAATCTCGCGAAAAACACAAGAAGGATTAGAGTTGTCTATGATGACCCTGATGCAACTGACTCATCATCAGATGAAGAAAGTTATTTTTTTGAGAAAGAACAAAGGAAGAGGAAGAGAGTTGTGCTTGAACTTTCAGTCCCTAATGTTTCAGATGACATAGTTAATGTCGATAAAACAATGGTCGATAATGATAATGGATTGAACAAGAGTTTAATGAAAGAACAACCTCGTATTAAATATACCGGTGTTCGAATGAGGAAATCGGGAAGATGGTCTGCCGAAATTCGCAACCCGATTAAACGTAAGCGCGATTGGTTAGGAACTTTCGACACAGCAGAAGAGGCTTCAAAAGCTTATGAAGCTAAAAAACTTGAATTTGAAGCCATAACTAAGGGGAAGAATAGTGCATTCAACAATGTTGTTACCATTGAAGCTATGGTTGCTATTTTGAATGGGACAAAGAGTGATACGTCAAATATATCTTCATCTTTGCCACAATGGGTTAATTGTGTTTCCAATTTAATTGAGAGTGATAAGATTTCAAATGATGAACCTATTCTTGAGAGTGTTGAGACTAATCCTTTGGAGGGTGAATTTGAACAAAATTTGCTAGATTTATGTCCTTTGGACATGGTGCGAAAACCGGATGTCGTTGCATCATCCAATTTGCACAATTGA 699 0.3763 MVRSPSHNLAKNTRRIRVVYDDPDATDSSSDEESYFFEKEQRKRKRVVLELSVPNVSDDIVNVDKTMVDNDNGLNKSLMKEQPRIKYTGVRMRKSGRWSAEIRNPIKRKRDWLGTFDTAEEASKAYEAKKLEFEAITKGKNSAFNNVVTIEAMVAILNGTKSDTSNISSSLPQWVNCVSNLIESDKISNDEPILESVETNPLEGEFEQNLLDLCPLDMVRKPDVVASSNLHN 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01354 232 CDD AP2 86 145 IPR001471 GO:0003700|GO:0006355
Trre11g01354 232 SMART rav1_2 86 146 IPR001471 GO:0003700|GO:0006355
Trre11g01354 232 Gene3D AP2/ERF domain 85 146 IPR036955 GO:0003700|GO:0006355
Trre11g01354 232 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700|GO:0006355
Trre11g01354 232 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700|GO:0006355
Trre11g01354 232 Pfam AP2 domain 86 134 IPR001471 GO:0003700|GO:0006355
Trre11g01354 232 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 13 134 - -
Trre11g01354 232 SUPERFAMILY DNA-binding domain 86 133 IPR016177 GO:0003677
Trre11g01354 232 ProSiteProfiles AP2/ERF domain profile. 86 143 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01354 Trre-Chr11 13234785 13235483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01354 14 172 AP2-EREBP Transcription Factor Family AT1G68550 43.210 8.60e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre11g01354 AP2 6.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01354 - - tpra:123904815 342.813