Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre11g01347 | ATGGCTGAACCAGACTCTGATCTCTGGATCAAGAATCCGGAGAGTGGTAAGGAAGAGTTTAACCACGTCGCATATAAAAGGATTCGTTCTCCTTTTAATACTCCAAGACCAAATGGTTTTGTTACTGAAGCTACAAGAGAAACTCTGCTGTTATGCACCAACAATGCTGCACTCGTTGAAACATTCTTGGATGCGAATCGTTGGCCGAAGATGTTTCCATGTATGATTGTTGAAGCTGAAACCTTGGATGTATTTTCAAATGGAATTGATGGAATAAATGGATCTATTCAACTAATGCATGCTGAGATCCAATTGCCTTCTCCGATGGTTCCGGTTCGAGAATATAATTTCACTAGTGTCTTTTGGACTATGAACTAG | 378 | 0.4021 | MAEPDSDLWIKNPESGKEEFNHVAYKRIRSPFNTPRPNGFVTEATRETLLLCTNNAALVETFLDANRWPKMFPCMIVEAETLDVFSNGIDGINGSIQLMHAEIQLPSPMVPVREYNFTSVFWTMN | 125 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre11g01347 | 125 | SUPERFAMILY | Bet v1-like | 37 | 123 | - | - | |
| Trre11g01347 | 125 | Pfam | START domain | 6 | 118 | IPR002913 | GO:0008289 | |
| Trre11g01347 | 125 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 | 1 | 118 | IPR042160 | - | |
| Trre11g01347 | 125 | ProSiteProfiles | START domain profile. | 1 | 125 | IPR002913 | GO:0008289 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre11g01347 | Trre-Chr11 | 13181648 | 13182277 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre11g01347 | 1 | 117 | Homeobox Transcription Factor Family | AT4G00730 | 44.915 | 1.10e-30 | 112 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre11g01347 | K09338 | - | tpra:123905936 | 171.014 |