Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01346 ATGTGCAGATGCAGAAGTTGTGAGGAATGGCAGCTTAGAGTTGAGAATGCTCGACTGAAGAATGAATTGGCTCGAGTGTCTGCCTTAGCTGCTATGGATGAAGTCATCAGGATAGCTGAACCAGACTCTGATGATGTCTGGATCAAGAATCCGGAGAGTGGTAAGGAAGAGTTTAACCATGTCGCGTATGAAAGGATTCGTTCTCCTTTTAATACTCCAAGACCAAATGGTTTTGTTACTGAAGCTACAAGAGAAACTCTGCTGTTATGCACCAACAGTGCTGCACTCGTTGAAACATTCTTGGATGCGGACCGTTGGGCGGAGATGTTTCCGTGTATGATTGTTGAAGCTGAAACCTTGGATGTATTTTCTAATGGAATTGATGGAATAAATGGTTCTATTCAACTGATGCATGCTGAGATTCAATTGCCTTCTCCGTTGGTTCCGGTTCGAGAATATAATTTCATTAGGTTTTGCAAGCAGCATGCTGAAGGTAAGTGGGCTGTAGTTGATGTTTCGTTCGACTATGGTCGTAATGGTCCCAACGGAAACCCTAAGATCAGCTGCAAGAAGCTTCCGTCTGGCTGTATTTTGCAGGACATGCCCAATGGTTTTTGTAAGATTACATGGGTGGATCATTCTCAATATGATGAGAGTGCTGTCCACCAAATCTATCAACCATTGGTTAACTCCGGCATCGCATTTGGTGCTTATAGATGGCTTGCAACTCTCCAGAGGCATTGTGAATCCCGTGCCATCCTCATGGCTGCCGTACTGTCTGCTGACCCTGAAGTCGTATGCCCAATTGGCAAGAGAATCATGTCAAAGCTCGCGCGGCAGATGTCCGATTACTTATGGTCTGGAATTTGTCCTTCGTCGGATAGCGACTGGGACATCCTTCTCACTACTGACATGGGCAACAGCGACCTGATAATAACGTCCCAAGAAATTCAGGATGCCTATGGTGCAAATCCTAGCATCATATTAAGTGCTTCCACTTCTGTTTGGATGCCGGTCTCGTGGCAACGGGTGTTTGATTTCCTCCGTGATGCACGAAGGAGAAGTGAGTGGGATGTTTTGTCCAATGGTGGATCAATGGAGGAGATGGTCCGCGTTGCTACAGGAGAAGGGATTGGAAATTCAGTTTCTATACTTCGTGGTCATAATGCTGCAAATGGAATATATCTACAAGATTCATGGACGGATAGTTCTTGCTCGATGGTCGTGTACTCTCCGATCAGCATGCAATCCTTGGACATGCTGATGGATGGCGGAGATTCTTCATTTGTTGCTCTGTTGCCTTCCGGCTTTTCAATTCTTCCGGATGGCTATTCAAATAGCAACACCGGTACTTCAAGTGACGATAGTGGCAGCAGTGACAACGACAACAGCGGATGCTTGCTCACAGTTGGATTTCAAATGTTGCTGACAAATGAATCATTTGATACCATTTATGAACTCATGTCACACACCATTGAGAAGATCAAAGATGCTCTTGAAGTTGAATGA 1509 0.4513 MCRCRSCEEWQLRVENARLKNELARVSALAAMDEVIRIAEPDSDDVWIKNPESGKEEFNHVAYERIRSPFNTPRPNGFVTEATRETLLLCTNSAALVETFLDADRWAEMFPCMIVEAETLDVFSNGIDGINGSIQLMHAEIQLPSPLVPVREYNFIRFCKQHAEGKWAVVDVSFDYGRNGPNGNPKISCKKLPSGCILQDMPNGFCKITWVDHSQYDESAVHQIYQPLVNSGIAFGAYRWLATLQRHCESRAILMAAVLSADPEVVCPIGKRIMSKLARQMSDYLWSGICPSSDSDWDILLTTDMGNSDLIITSQEIQDAYGANPSIILSASTSVWMPVSWQRVFDFLRDARRRSEWDVLSNGGSMEEMVRVATGEGIGNSVSILRGHNAANGIYLQDSWTDSSCSMVVYSPISMQSLDMLMDGGDSSFVALLPSGFSILPDGYSNSNTGTSSDDSGSSDNDNSGCLLTVGFQMLLTNESFDTIYELMSHTIEKIKDALEVE 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01346 502 CDD START_ArGLABRA2_like 24 249 - -
Trre11g01346 502 Coils Coil 492 502 - -
Trre11g01346 502 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 5 499 IPR042160 -
Trre11g01346 502 ProSiteProfiles START domain profile. 43 253 IPR002913 GO:0008289
Trre11g01346 502 Gene3D - 31 255 IPR023393 -
Trre11g01346 502 SUPERFAMILY Bet v1-like 29 250 - -
Trre11g01346 502 SMART START_1 25 250 IPR002913 GO:0008289
Trre11g01346 502 SUPERFAMILY Bet v1-like 268 474 - -
Trre11g01346 502 Pfam START domain 70 250 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01346 Trre-Chr11 13166691 13169825 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01346 28 502 Homeobox Transcription Factor Family AT3G61150 44.919 3.81e-148 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01346 K09338 - gmx:100794400 516.538