Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01345 ATGGCACCGACCATGTGCAGATGCAGAAGTTGTGAGGAATGGCAGCTTAGAGTTGAGAATGCTCGACTGAAGAATGAATTGGCTCGAGTGTCTGCCTTAGCTGCTATGGATGAAGTCATCAGGATAGCTGAACCAGACTCTGATGATGTCTGGATCAAGAATCCGGAGAGTGGTAAGGAAGAGTTTAACCATGTCGCGTATGAAAGGATTCGTTCTCCTTTTAATACTCCAAGACCAAATGGTTTTGTTACTGAAGCTACAAGAGAAACTCTGCTGTTATGCACCAACAGTGCTGCACTCGTTGAAACATTCTTGGATGCGGACCGTTGGGCGGAGATGTTTCCGTGTATGATTGTTGAAGCTGAAACCTTGGATGTATTTTCTAATGGAATTGATGGAATAAATGGTTCTATTCAACTGATGCATGCTGAGATTCAATTGCCTTCTCCGTTGGTTCCGGTTCGAGAATATAATTTCATTAGGTTTTGCAAGCAGCATGCTGAAGGTAAGTGGGCTGTAGTTGATGTTTCGTTCGACTATGGTCGTAATGGTCCCAACGGAAACCCTAAGATCAGCTGCAAGAAGCTTCCGTCTGGCTGTATTTTGCAGGACATGCCCAATGGTTTTTGTAAGATTACATGGGTGGATCATTCTCAATATGATGAGAGTGCTGTCCACCAAATCTATCAACCATTGGTTAACTCCGGCATCGCATTTGGTGCTTATAGATGGCTTGCAACTCTCCAGAGGCATTGTGAATCCCGTGCCATCCTCATGGCTGCCGTACTGTCTGCTGACCCTGAAGTCGTATGCCCAATTGGCAAGAGAATCATGTCAAAGCTCGCGCGGCAGATGTCCGATTACTTATGGTCTGGAATTTGTCCTTCGTCGGATAGCGACTGGGACATCCTTCTCACTACTGACATGGGCAACAGCGACCTGATAATAACGTCCCAAGAAATTCAGGATGCCTATGGTGCAAATCCTAGCATCATATTAAGTGCTTCCACTTCTGTTTGGATGCCGGTCTCGTGGCAACGGGTGTTTGATTTCCTCCGTGATGCACGAAGGAGAAGTGAGTGGGATGTTTTGTCCAATGGTGGATCAATGGAGGAGATGGTCCGCGTTGCTACAGGAGAAGGGATTGGAAATTCAGTTTCTATACTTCGTGGTCATAATGCTGCAAATGGAATATATCTACAAGATTCATGGACGGATAGTTCTTGCTCGATGGTCGTGTACTCTCCGATCAGCATGCAATCCTTGGACATGCTGATGGATGGCGGAGATTCTTCATTTGTTGCTCTGTTGCCTTCCGGCTTTTCAATTCTTCCGGATGGCTATTCAAATAGCAACACCGGTACTTCAAGTGACGATAGTGGCAGCAGTGACAACGACAACAGCGGATGCTTGCTCACAGTTGGATTTCAAATGTTGCTGACAAATGAATCATTTGATACCATTTATGAACTCATGTCACACACCATTGAGAAGATCAAAGATGCTCTTGAAGTTGAATGA 1521 0.453 MAPTMCRCRSCEEWQLRVENARLKNELARVSALAAMDEVIRIAEPDSDDVWIKNPESGKEEFNHVAYERIRSPFNTPRPNGFVTEATRETLLLCTNSAALVETFLDADRWAEMFPCMIVEAETLDVFSNGIDGINGSIQLMHAEIQLPSPLVPVREYNFIRFCKQHAEGKWAVVDVSFDYGRNGPNGNPKISCKKLPSGCILQDMPNGFCKITWVDHSQYDESAVHQIYQPLVNSGIAFGAYRWLATLQRHCESRAILMAAVLSADPEVVCPIGKRIMSKLARQMSDYLWSGICPSSDSDWDILLTTDMGNSDLIITSQEIQDAYGANPSIILSASTSVWMPVSWQRVFDFLRDARRRSEWDVLSNGGSMEEMVRVATGEGIGNSVSILRGHNAANGIYLQDSWTDSSCSMVVYSPISMQSLDMLMDGGDSSFVALLPSGFSILPDGYSNSNTGTSSDDSGSSDNDNSGCLLTVGFQMLLTNESFDTIYELMSHTIEKIKDALEVE 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01345 506 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 4 503 IPR042160 -
Trre11g01345 506 CDD START_ArGLABRA2_like 28 253 - -
Trre11g01345 506 ProSiteProfiles START domain profile. 47 257 IPR002913 GO:0008289
Trre11g01345 506 SUPERFAMILY Bet v1-like 33 254 - -
Trre11g01345 506 Gene3D - 35 259 IPR023393 -
Trre11g01345 506 SMART START_1 29 254 IPR002913 GO:0008289
Trre11g01345 506 Pfam START domain 74 254 IPR002913 GO:0008289
Trre11g01345 506 SUPERFAMILY Bet v1-like 272 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01345 Trre-Chr11 13166679 13169825 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01345 32 506 Homeobox Transcription Factor Family AT3G61150 44.919 5.73e-148 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01345 K09338 - gmx:100794400 516.538