Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01343 ATGTCAAAGCTTGCTCAGCGGATGATCGATTACTTCTGCATTGCGCTAAGTGCTGCAACATCTGTTTGGATGCCGGTGTCGCGACAAAGGGTGTTTGACTTCCTCCACGATGCACGCTTGAGATTTGAATGTGATCTTTTGTCCAGTGGTGGAACAATGCACGAAATGGTCCACATTGCTACAGGAGGACTTGGAAATTCCGTTTTTATCATTAGCGCTGATAATGTAAGCTGCGAATCGAAACAAAGGGCTTTGCAAGATTCATGGACTGATAGCTCTAGTTCGATGAATGTTTACTCTCCCATCAACATGCAGTCCTTGAACTTGGTGATGTCTGGAGGAGATTCTTCATTTGTTGCTCTTTTGCCTTCCGGCTTTTCAATTCTTCCGGATGGCTATTCGAGTAACAACAGCAATGGAACTTCAAGTGATGGTAGCAGCAGTAGCGGCAGCGACAATGTCGGATGCTTACTCACGTTTGGATTGAAAATGTTGCTGAACAACCATCCATCAAGTAAGCTGACAATTGAATCGATTGATACTGTCAATAACCACATTGCGACCACCATCCAGAAGGTCAAAGACGTTATCGGAGTTGCTTGA 603 0.4461 MSKLAQRMIDYFCIALSAATSVWMPVSRQRVFDFLHDARLRFECDLLSSGGTMHEMVHIATGGLGNSVFIISADNVSCESKQRALQDSWTDSSSSMNVYSPINMQSLNLVMSGGDSSFVALLPSGFSILPDGYSSNNSNGTSSDGSSSSGSDNVGCLLTFGLKMLLNNHPSSKLTIESIDTVNNHIATTIQKVKDVIGVA 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01343 200 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 14 196 IPR042160 -
Trre11g01343 200 SUPERFAMILY Bet v1-like 7 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01343 Trre-Chr11 13160862 13161687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01343 4 199 Homeobox Transcription Factor Family AT5G52170 43.939 2.01e-48 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01343 K09338 - gmx:100785102 193.356