Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01342 ATGGAACCAAATGGTGCTAATGGTGCAAGTGGTTCAAATGGTGCAAATCGTGTTAATGGTCCTAATGGTGAGATGAGACTACCCGGAGAAAATTTTGATGCCAGTGTGATGGGTAGGATGAGGGAGGATGATTTTGATACCAGGTCAGGAAGTGAAAATTTCGATGCTTCAGGTGATGAAGCAGATGCCGGTGATGATCAACAACAAAATAAGCGAAAAAAGAAGTATCATCGACATACTCCTCAGCAGATTCAAGAGCTTGAAAATTTCTTCAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGAGCTGATCTTAGCCGGAAACTTGGCTTGGACAACAAGCAAGTTAAATTCTGGTTCCAGAACAAACGGACGCAAATGAAGACACAAGTGGAACGCCATGAGAACATGATTCTTAGGCAGGAAAACGAGAAGCTACGAGCTGAAAACAGTATGCTAAAGGAGGCTCTAGGAAATCCAATTTGCAACAACTGTGGTGGCCCGGGAATTCCTGGACAAATTTCAATGGACGATCATCAGCTTAGAATTGAGAATGCTCGAATGAAGGAGGAGTTGGCCCGACTGACTTCCTTAACCCAGTTCCTCGGCCGACCAGTCTCTGCATTGACTGCAATGTCTATGCAGAATCCGAATTTAGGTCTTGAATTCGGTATGGGAAGGAATGGAATTGCTGGTCCGAGCAATTACAACATGCAGCTGCCGATGGGATTTGTTATGGGAGATGGAGTTATGGGAGCTGCACCGGCAAATTCTGGAATGCAACCACCAATTGGAATCATTGGAAATGATCCCCAGCAGGAGAGATCTATGCTTATGGATCTCGCATTAGCTGCGATGAATGAACTTGTCAAACTGTGCGAACCTGAATCCCGCCTTTGGATTAAGAGTACAGACACCGGGAAGGATGTTCTTAACCTTGAAGAGTATGCGAGGATTGGTTCTCCTTTCAACACTCCGATACCAAATGGTTATACAACTGAAGCTACAAGAGAAACCGGGCTGTTATACACAACCAGTGCGGCTCTCGTGGAAACATTCCTAGACGCGGACCGGTGGTCAGAGATGTTTCCATGTATGATTGCTCAAGCTGCAACCTTGGATGTTTTATCCAATGGAATGGGTGGAACCAGAAATGGAGCTATGCAAGTGATGCAAGCTGAGGTTCAATTACCTTCTCCATTTGTCCCGGTTCGACAATATCGTTTCCTCAGGTTCTGCAAGCAGCATGGTGAAGGTATTTGGGTCCTGGTTGACATTTCGGTCGACCTTGGTCGTAATGGTTCAAACAGCATCCCTTACATGAGCTGTAAGAAGCTTCCATCTGGCTGCATTTTGCAGGACATTGATGGCTTGTGCAAGATAACTTGGGTGGATCATACTCAATATGACGAGAGTGCTGTCCACCAAACCTATCGCACAATGGTCAGCTCCGGCCTCGCATTTGGTGCCCATAGATGGGTCGCGACTCTCCAGAGGCATTGTGAATCCCTTGCTATTCTCATGGCTGCTGCACCATCTGATGACCCTACAGTCATAAGCCCGTCCGGAAAGAGAAGTATGTCAAAGCTTGCTCAGCGGATGACGGACTACTTCTGGTCGGGAGTTTCTCCGTCTTCGGCTTGCAAGTGGGACATCATTCCTATTAATAACAATGGAAGCATTGACATGAGAATCATGTCCCGAAAAATTCCCGATGCTTCTGGAGAGGATCTTAGCATTGTGCTAAGTGCTGCGACATCTGTTTGGATGCCGGTGTCGCGGCAAAGGGTTTTTGATCTCCTCCGCGATGCACGCTTGAGAGGCGAATGGGATCTTTTGTCCAGTGGTGGAACAATGCAGGAAATGGTCCACATTGCTACAGGAGGACTTGGAAATTCCGTTTCTATCATTTCATCTGATACTGCTGCAAATGGAAACGAGGGGCTGTATCTGCAAGATTCATGGACCGATAGCTCTGGTTCGATGGTTGTTTACTCTCCCATCAACATGCAGTCCTTAAACTTGGTGATGTCTGGAGGAGACTCTTCATTTGTGGCTCTTTTGCCTTCCGGGTTTTCAATTCTTCCGGATGGCTATTCGAGTAACAACAACATCATTGGAACTTCAAGTGACGGAAGCAGCAGCAGTGGCAGCGACAATGACAACAGCGGATGCTTGCTCACTGTTGGATTGCAAATGTTGCTGAACAACCATCCATCAAGCAAGTTGACAGCTGAATCGGTTGATACTGTCAATAACCACCTTGCGAACACCATCCAGAAGGTCAAAGATGCACTCGGAGTCGCTTGA 2310 0.4671 MEPNGANGASGSNGANRVNGPNGEMRLPGENFDASVMGRMREDDFDTRSGSENFDASGDEADAGDDQQQNKRKKKYHRHTPQQIQELENFFKECPHPDEKQRADLSRKLGLDNKQVKFWFQNKRTQMKTQVERHENMILRQENEKLRAENSMLKEALGNPICNNCGGPGIPGQISMDDHQLRIENARMKEELARLTSLTQFLGRPVSALTAMSMQNPNLGLEFGMGRNGIAGPSNYNMQLPMGFVMGDGVMGAAPANSGMQPPIGIIGNDPQQERSMLMDLALAAMNELVKLCEPESRLWIKSTDTGKDVLNLEEYARIGSPFNTPIPNGYTTEATRETGLLYTTSAALVETFLDADRWSEMFPCMIAQAATLDVLSNGMGGTRNGAMQVMQAEVQLPSPFVPVRQYRFLRFCKQHGEGIWVLVDISVDLGRNGSNSIPYMSCKKLPSGCILQDIDGLCKITWVDHTQYDESAVHQTYRTMVSSGLAFGAHRWVATLQRHCESLAILMAAAPSDDPTVISPSGKRSMSKLAQRMTDYFWSGVSPSSACKWDIIPINNNGSIDMRIMSRKIPDASGEDLSIVLSAATSVWMPVSRQRVFDLLRDARLRGEWDLLSSGGTMQEMVHIATGGLGNSVSIISSDTAANGNEGLYLQDSWTDSSGSMVVYSPINMQSLNLVMSGGDSSFVALLPSGFSILPDGYSSNNNIIGTSSDGSSSSGSDNDNSGCLLTVGLQMLLNNHPSSKLTAESVDTVNNHLANTIQKVKDALGVA 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01342 769 ProSitePatterns 'Homeobox' domain signature. 105 128 IPR017970 GO:0000981|GO:0006355
Trre11g01342 769 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 69 766 IPR042160 -
Trre11g01342 769 SUPERFAMILY Bet v1-like 274 504 - -
Trre11g01342 769 ProSiteProfiles 'Homeobox' domain profile. 70 130 IPR001356 GO:0003677
Trre11g01342 769 SMART START_1 280 503 IPR002913 GO:0008289
Trre11g01342 769 CDD homeodomain 73 130 IPR001356 GO:0003677
Trre11g01342 769 Pfam START domain 281 503 IPR002913 GO:0008289
Trre11g01342 769 Gene3D - 60 146 - -
Trre11g01342 769 ProSiteProfiles START domain profile. 271 506 IPR002913 GO:0008289
Trre11g01342 769 SMART HOX_1 72 134 IPR001356 GO:0003677
Trre11g01342 769 MobiDBLite consensus disorder prediction 1 19 - -
Trre11g01342 769 Coils Coil 124 159 - -
Trre11g01342 769 SUPERFAMILY Homeodomain-like 60 130 IPR009057 -
Trre11g01342 769 FunFam Homeobox-leucine zipper protein HDG1 59 146 - -
Trre11g01342 769 CDD START_ArGLABRA2_like 275 502 - -
Trre11g01342 769 Pfam Homeodomain 73 128 IPR001356 GO:0003677
Trre11g01342 769 MobiDBLite consensus disorder prediction 1 80 - -
Trre11g01342 769 SUPERFAMILY Bet v1-like 522 763 - -
Trre11g01342 769 MobiDBLite consensus disorder prediction 36 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01342 Trre-Chr11 13148152 13151987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01342 22 766 Homeobox Transcription Factor Family AT3G61150 49.144 0.0 711
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre11g01342 START 9.1e-43 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01342 K09338 - gmx:100794400 907.901