Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01341 ATGGAACCAAATGGTGCTAATGGTTCAATTGGTGCAAATCGTGTTAATGGTCCTAATGGTGAGATGAGACTACCTGGAGAAAATTTTGATGCTAGTGTGATGGGTAGGATGAGGGAGGATGATTTTGATAGCAGGTCAAGAAGTGAAAATTTCGATGCTTCCGGTGATGAAGCAGATGTCGGTGATGATCAACAACAAAATAAGCGAAAAAAGAAGTATCATCGACATACTCCTCAGCAGATTCAAGAGCTCGAAAATTTCTTCAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGAGCTGATCTTAGCTGGAAACTTGGCTTGGACAACAAGCAAGTTAAGTTCTGGTTTCAGAATAAACGAACGCAAATGAAGACACAACTGGAACGCCATGAAAACATGCTTCTTAGGCAGGAAAACGAGAAGCTACGAGCTGAAAACAATATGCTGAAGGAGGCTCTAGCAAATCCAATTTGCAACAACTGTGGTGGCCCGGGAATTCCTGGACAAATTTCAATGGACGATCATCAGCTTAGAATTGAGAATGCTCGACTGAAGGATGAGTTGGCCCGACTGACTGCCTTAACCCAGTTACTCGGCCGACCAGTCTCTGCATTGACTGCAATGTCTATGCAGAGTCTTGAATTCGGTGTAGGAAGGAATGAAATTGCTGGTCCGAGCAATTACAACATGCAGCTGCCAATGGGATTTGTTATGGGAGATGGAGTTATGGGAGCTGCACCAGAAAATTCTGGAATGCAACCACCGATGGGAATGATTGGAAATGATCCCCAGCAGGAGAGATCTATGCTAGGGGTGATCGTATCTGAACCAATCCAAAAGTAA 846 0.4409 MEPNGANGSIGANRVNGPNGEMRLPGENFDASVMGRMREDDFDSRSRSENFDASGDEADVGDDQQQNKRKKKYHRHTPQQIQELENFFKECPHPDEKQRADLSWKLGLDNKQVKFWFQNKRTQMKTQLERHENMLLRQENEKLRAENNMLKEALANPICNNCGGPGIPGQISMDDHQLRIENARLKDELARLTALTQLLGRPVSALTAMSMQSLEFGVGRNEIAGPSNYNMQLPMGFVMGDGVMGAAPENSGMQPPMGMIGNDPQQERSMLGVIVSEPIQK 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01341 281 CDD homeodomain 70 127 IPR001356 GO:0003677
Trre11g01341 281 Gene3D - 57 145 - -
Trre11g01341 281 MobiDBLite consensus disorder prediction 33 54 - -
Trre11g01341 281 SUPERFAMILY Homeodomain-like 58 127 IPR009057 -
Trre11g01341 281 Pfam Homeodomain 70 125 IPR001356 GO:0003677
Trre11g01341 281 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 64 214 IPR042160 -
Trre11g01341 281 Coils Coil 121 156 - -
Trre11g01341 281 FunFam Homeobox-leucine zipper protein HDG1 56 143 - -
Trre11g01341 281 ProSitePatterns 'Homeobox' domain signature. 102 125 IPR017970 GO:0000981|GO:0006355
Trre11g01341 281 Coils Coil 175 195 - -
Trre11g01341 281 MobiDBLite consensus disorder prediction 1 77 - -
Trre11g01341 281 SMART HOX_1 69 131 IPR001356 GO:0003677
Trre11g01341 281 ProSiteProfiles 'Homeobox' domain profile. 67 127 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01341 Trre-Chr11 13132135 13133782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01341 27 225 Homeobox Transcription Factor Family AT4G00730 59.204 2.04e-72 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre11g01341 Homeodomain 5.5e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01341 K09338 - gmx:100820113 347.821