Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01337 ATGAACTTCCTCCGGCGACTCTTCGGCGGTAAAAAACACCGCAATCAACCACAAGAACCTACCAAAACCACCGCAAAAAAAGACAAAAGAAGCTGGAGCTTCGCAAAGAACAACACAAGAGACAAAACAAATTCACACTCATCATTACATAACAACAAAAATTCTGACCCTTCTTCTTCACCTTTCGCCGGAAATTACGATGCCAATAAACATGCCATTGCTGTTGCTGCTGCTACCGCTGCTGTTGCTGAGGCTGCACTTGCTGCCGCTCATGCTGCTGCTGAAGTTGTTAGACTGACTAGTAACACCGGAGCAGGAAAAAATGCAACTCCGGTGCATGACCGGCGACGGTTGCAGGAGGAGATTGATGCTGCCGTGAAGATGCAGTCGGCGTTCCGAGGTTACTTGGCAAGGAGGGCATTAAGAGCACTCAAAGCATTAGTGAAGTTGCAAGCATTGGTGAGAGGTCACATTGTAAGAAAACAAACAGCTGATATGCTAAGACGAATGCAAACATTGGTCCGACTTCAGTCTCGAGCACGTGCAAGTCGTGTGCACATTTCCGATAATAATACGCACTCTTTCAAGTCTCCACTTTCTTATTACCCTGTCCCTGATGATTATGAGCACCCTCTTCGTGTCTATAGTACAAAATTTGATGGATCTTCCATCCTTAAGAGATGTAGTTCCAATGCAAATTTTAGAGACATGAACTTAGAACGAGCCCGGTTTGGTTCGAATTGGTTAGACGGTTGGATGGAAGAAAACTCATGGAACCAAAACGGCGATGCTTCATCGAAAAAAGTACAATTTGATGATGAAAAGAGTGATAAAATTCTTGAAATAGATACATGGAAGCCAAATTTGACCTCACACCATAGTACTAGTACATCTTTTCAACATCATTATTCATCTTGTGATTACACTAGTGAGAATTTTATGGTACACGAGTCACCGTCGAAACGATTGTCTAAACCTCACAATCCAAGTCTCTCTTCTATGAAACATCATAAAGGAAAAGAAGAAGTAGCTTCTTCACGAACGGCCGAGAATAGTCCACAAGCATTTTCGGCTTCATCGAGAATCGAAAGTGTTTCAAGGAGAGGTCCTTTTACACCTACTAAAAGTGAGTCTTCATGGGGTTTTTTCAATGGTTACTCTGGCTATCCTAGTTACATGGCAAATACTCAATCTTCTAGGGCTAAGGTTAGGTCACAAAGTGCTCCAAGACAAAGGCTAGAGTTTGAGAGATGTGGTTCAACTACTAGGTCTATTCAAGGTCTTTGGGAATCAGGTTCTAATTCTGATAAGGATTTTGATTTTAAGACCAAGGTTTATCCAACCACAAGTAGCTTGAACAAAATTGGGAGCACAAATTTAAGGTGA 1386 0.4221 MNFLRRLFGGKKHRNQPQEPTKTTAKKDKRSWSFAKNNTRDKTNSHSSLHNNKNSDPSSSPFAGNYDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSNTGAGKNATPVHDRRRLQEEIDAAVKMQSAFRGYLARRALRALKALVKLQALVRGHIVRKQTADMLRRMQTLVRLQSRARASRVHISDNNTHSFKSPLSYYPVPDDYEHPLRVYSTKFDGSSILKRCSSNANFRDMNLERARFGSNWLDGWMEENSWNQNGDASSKKVQFDDEKSDKILEIDTWKPNLTSHHSTSTSFQHHYSSCDYTSENFMVHESPSKRLSKPHNPSLSSMKHHKGKEEVASSRTAENSPQAFSASSRIESVSRRGPFTPTKSESSWGFFNGYSGYPSYMANTQSSRAKVRSQSAPRQRLEFERCGSTTRSIQGLWESGSNSDKDFDFKTKVYPTTSSLNKIGSTNLR 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01337 461 MobiDBLite consensus disorder prediction 37 63 - -
Trre11g01337 461 SMART iq_5 120 142 IPR000048 GO:0005515
Trre11g01337 461 SMART iq_5 143 164 IPR000048 GO:0005515
Trre11g01337 461 Pfam IQ calmodulin-binding motif 145 162 IPR000048 GO:0005515
Trre11g01337 461 Pfam IQ calmodulin-binding motif 123 142 IPR000048 GO:0005515
Trre11g01337 461 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 114 166 IPR027417 -
Trre11g01337 461 Pfam Protein of unknown function (DUF4005) 352 414 IPR025064 -
Trre11g01337 461 MobiDBLite consensus disorder prediction 1 63 - -
Trre11g01337 461 MobiDBLite consensus disorder prediction 12 36 - -
Trre11g01337 461 MobiDBLite consensus disorder prediction 346 370 - -
Trre11g01337 461 MobiDBLite consensus disorder prediction 317 370 - -
Trre11g01337 461 Gene3D - 119 164 - -
Trre11g01337 461 ProSiteProfiles IQ motif profile. 121 149 IPR000048 GO:0005515
Trre11g01337 461 ProSiteProfiles IQ motif profile. 145 172 IPR000048 GO:0005515
Trre11g01337 461 PANTHER IQ-DOMAIN 5-RELATED 26 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01337 Trre-Chr11 13062032 13068327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01337 1 429 IQD Protein Family AT5G62070 45.475 2.31e-59 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01337 - - gmx:100785181 546.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g01337 11 13062032 13068327 Trre11g01337 11 13062032 13068327 ECH
Trre11g01337 11 13062032 13068327 Trre1g05450 1 60048131 60052862 PCT