Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01322 ATGGCACCTTCTCGGGTGGCAGGAGGTTTAGCTCAATCATCATCAAGTTCTGGAATTTTCTTTCAAGGAGAGGGGCAGTCACATAATTTAGTCAACTCTCACTTGAGCTCATCGTTAGTCAACTCATCTAACACTGTTCCTGGAACTGGTCATTCCAACCTTGGTCCAGTTTCTGGGGATATGAATAATGCAATTTTGAACAGTGTGGCTAACTCAGCACCAAGTGTTGGAGCTAGTTCTTTAGTCACAGATGCAAATTCTGCACTCTCTGGTGACCGCCATATGCAAAGAAGTGCTAGCATTAATGGTGACTCATACTTGAGATTACCTGCGTCACCTCTGTCATTTACATCAAATAATATTAGCATTTCTGGGTCACCTGCAATGGATGGTTCCTCTGTAGTACAGCAGAATTCTCATCAAGATCAGAATGCTCAACAAATGCAGCAGAATCAACAGAAGCTGCAGGGTGCTTCAAGTTCTATGCATTTGCCTGCCTCTCAAACTGGCACATCTTCACATCAAATGGGTGCTCAAGTAGCAGGATCTTTCATTCAAGATCCAAACAATATATCTCACTTGCTGAAAAAACGTAGGCTGGATATCAAACAAGATGATATAATGCAACAACAGGTAATACAGCAGCTTCTTCAGAGACAAGACCCTACACAATTCCAGAGTCGTAGTCCACAGTTACAGGCTATGCTTCAGCAACAGCATAGGCTTAAGCAACAACAAATTTTTCAGTCATTGCCCCAGGCCCAGCGAATACAATTGCTGCAGCAGCAACAACAACAGCAGCAGCAACAACAACAACAAATGCAGAGGCAGCAAATCCAACAACAAATGATGCAGCCCTCAGCTGGTGTTAAGCGTCCACCTGATAGTGGTGTTGGAGGTGTATGTGCCCGCCGATTGATGCAGTACCTCTATCATCAAAGACAGCGACCAAGTGATAATAGTATTGCATATTGGAGGAAATTTGTGGCTGAATATTACTCTCCCCGTGCAAAGCAACGGTGGTGCTTGGCATTATATAATAATGTTGGACACCATACAGCTGGTGTTTTACCGCAAGCAACTACGCATGCTTGGCAATGTGATATATGTGGAACTAAATCTGGGAGAAGGGGATTTGAAGCAACTTTTGATATACTACCCAGACTTAACGTAGTCAAATTTGGTGGTGGTGTGATCGATGAACTTCTGTTTTTGGACTTGCCGCGTGAAATAAGATTTTCTTCTGGTTTGATGATGTTAGAATATACAAAAGCGGTTCAAGAGTGTGTCTACGAGCAGCTCCGCGTTGTTCGCGAGGGTCAACTTCGTATCGTATTTACTCAAGATCTGAAGATATTTTCTTGGGATTTCTGTGTAAGGCGCCATGAAGAACTTCTTCCTCGAAAGTTAGTTGCACCACAGGTCAACCAATTAGTTCAAGTAGCGCAAAAATGCCAAAGTACAATTTCTGAAAGTGGGTCAGATGGGGTTTCTCAGCATGACTTGCAAACTAACAGCAACATGGTCCTAACTGCTGGGCGTCAGCTTGCAAAGAGTTTGGAGCTACAATCACTAAATGACTTGGGCTTTTCAAAAAGATTTGTGAGAACTTTGCAGATTTCTGAGGTTTGCAATAGCATGAAAGATCTAATCGATATCTGTTTTGATCACAATGTCGGAGCAATAGAGAGTTTGAAAAATTATTCTCAATTTTCAACCTCATCAAAGCACCAAATGCAAAAGATGCAGGAGATGGAACAGGGAGCAAATGTTCAAGGTCTCCCACCTGATCGAAACACACTCAATAAGCTGATGACATTGAATCCTGGATCTAACAATATTATAAACAACAATCACAATATGGGCAATCGTGGTACTTTGACTGGGCCATCACAAGCTGCTCTGGCAATGTCCAGTTACCAGAATCTTCTGATGAGACAAAACTCGATGAATTCAAGCCCCAGCGCACTTCACCGAGAAGGTTCCCCTTTTAATAACTCGATCCAGAGTCCCTCATCAGCTTCTTTGCAAGGTGCTGGTGCTGCTGCTATAATCCCAGGCTCTATGCAGAATTCACCTCACAACAGTACTGGTGGTTTCTCAAATCAACATCTACCCTCACAACAGCAGCGGCAGCAGCAGCAGCAACAACAACACTTTCAGCAGCGCTCGTTAAGTGCGAATAATTTACCTCAACAAAATCACTCACAGGGACCTCAAGGAAATCAATCACTGCAACAACAGATGATCCAGCAACTACTGCAGGATATGTCAAATAACAATGGAGGAGTTCAACAACAGTCTCATAGTGGACCCAATGTAAGTGGGAATATGGCAAAGAATAATTTGGGTTTTGGGGGACAAACTCCACCCACAACCGGAGGAGGCTCTGCCAGTGGTCCAGCAAATAATGGACCTGTTTCAAGGAGTAATAGCTTCAAAGCTGCTTCAAACAGTGATTCTTCTGCAGCAGCTGGTGGAGGCAGCAACAATGGATTCAACCAGAGAGCATCTGATATGCAGCAAAATCTCGCTTTGCAAGATGTGGCTTCGGAATTTGGCCATGACTTTGCAGATAACCCCTTCTTTAACAGTGATCTTGATGATAACATGGGTTTTAACTGGAAGACATGA 2634 0.4336 MAPSRVAGGLAQSSSSSGIFFQGEGQSHNLVNSHLSSSLVNSSNTVPGTGHSNLGPVSGDMNNAILNSVANSAPSVGASSLVTDANSALSGDRHMQRSASINGDSYLRLPASPLSFTSNNISISGSPAMDGSSVVQQNSHQDQNAQQMQQNQQKLQGASSSMHLPASQTGTSSHQMGAQVAGSFIQDPNNISHLLKKRRLDIKQDDIMQQQVIQQLLQRQDPTQFQSRSPQLQAMLQQQHRLKQQQIFQSLPQAQRIQLLQQQQQQQQQQQQQMQRQQIQQQMMQPSAGVKRPPDSGVGGVCARRLMQYLYHQRQRPSDNSIAYWRKFVAEYYSPRAKQRWCLALYNNVGHHTAGVLPQATTHAWQCDICGTKSGRRGFEATFDILPRLNVVKFGGGVIDELLFLDLPREIRFSSGLMMLEYTKAVQECVYEQLRVVREGQLRIVFTQDLKIFSWDFCVRRHEELLPRKLVAPQVNQLVQVAQKCQSTISESGSDGVSQHDLQTNSNMVLTAGRQLAKSLELQSLNDLGFSKRFVRTLQISEVCNSMKDLIDICFDHNVGAIESLKNYSQFSTSSKHQMQKMQEMEQGANVQGLPPDRNTLNKLMTLNPGSNNIINNNHNMGNRGTLTGPSQAALAMSSYQNLLMRQNSMNSSPSALHREGSPFNNSIQSPSSASLQGAGAAAIIPGSMQNSPHNSTGGFSNQHLPSQQQRQQQQQQQHFQQRSLSANNLPQQNHSQGPQGNQSLQQQMIQQLLQDMSNNNGGVQQQSHSGPNVSGNMAKNNLGFGGQTPPTTGGGSASGPANNGPVSRSNSFKAASNSDSSAAAGGGSNNGFNQRASDMQQNLALQDVASEFGHDFADNPFFNSDLDDNMGFNWKT 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01322 877 MobiDBLite consensus disorder prediction 650 724 - -
Trre11g01322 877 Pfam LIM-domain binding protein 305 566 IPR029005 -
Trre11g01322 877 MobiDBLite consensus disorder prediction 759 836 - -
Trre11g01322 877 MobiDBLite consensus disorder prediction 688 724 - -
Trre11g01322 877 MobiDBLite consensus disorder prediction 122 177 - -
Trre11g01322 877 MobiDBLite consensus disorder prediction 38 57 - -
Trre11g01322 877 PANTHER LIM DOMAIN-BINDING PROTEIN 41 846 IPR029005 -
Trre11g01322 877 Coils Coil 257 282 - -
Trre11g01322 877 MobiDBLite consensus disorder prediction 277 296 - -
Trre11g01322 877 MobiDBLite consensus disorder prediction 650 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01322 Trre-Chr11 12916169 12920614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01322 292 568 C2H2 Transcription Factor Family AT1G43850 55.197 1.72e-97 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01322 - - gmx:100816886 1095.49