Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01300 ATGTTGAGATCAAAAAAGAATTCACAGAATACGCCATCCGATAAAGTACATTATCTACGCTATGTTTGTAACAAACAAGGTTACAAGAAAGGAAGTTTGCTTGATCCGAAGAACAGACCAACATCAGATAGTCCGGTTGTTGTTGAATTTGAGAAAGTTAAAGAAAAAGCCGAGGAAATGATTGGTTGTACAGCTGATATTTTTTTGAAGTTGGATGAAACTCTGAATGCATATAAGATATACAAATGGGATGTGTCTCATTGTCACCCGTTACATAAAGCGGAGCATGGACGTTTTTTGAGATCATTTAGAGAAGTCAATGAAGTGCAAGGACAGCTAGCTGTAATCAATTTCAAAGCTGGAATGTCCATGAGAACTTCTTATGAAGTAATGGGTCAGGGAGTTGGAGGCACTGATAATCTCCCTTTTCGATTTTCGGATTTAAAGAATTATCTGATGACGAAACGTCAGAAAGAGATGGTTGTTGGTGAAGCAACTGTGATTCAAGAATTTTTTAGGAATGAAGCGCTCTCGAAACCATCCTTTTATTATGATATTCAAGTTGATGCTGCGGAAGATATAGCTAGTATTTTTTGGGCAGATGGGATTATGCAGCTTGATTATGCTTTATTTGGTGATGTTATCAGCTTTGATACGACTTACCGAACCAACAATCAGTATCGACCATTAGCTGCATTAATGGGCTTTGATAATCATCGTAAGAGTGTGTTGTTTGGTGCTGCCCTACTATATGATGAGACCGCAGCTACTTTTGATTGGTTGTTCACAACTTTTTTGAGGTGTATGGCAAATAAGAAACCAAAGACAATATATACAGACCAGGCTACTGCGTTGTTGAAGTCAGTTCCAAACATTTTTGAAGACAATGAAGCTGATTTTGATTACAATTGGGATCAAATGATGAAAAATTGTTTTGATGGAAGGCCAACTTCAGACTTTAGTTGGCTTGTTCAAACTCACAAGAATCGTATGCATTGGTCTTCAGCTTGGGTGAAGTCACATTTTACGGCCGGTTTGAAAACGACTCAATTAAGTGAGTCTTTCAATGCTTTTCTCCGTGGATTTCTGCAGCCAGACCATTCACTTGTTCGATTCTTTAGTCATTTTAACATGATGGTTCAGAGAATGAAGGATAACCATGCTGAGTTTGACTTCAAGGCTGCAAATACTAGAACAAAAAACAATTATCCAAACAGTCAGCTGATGCGGTCTGTGGTAAACAAGTACACATCATCTAGCTTTGCATTCATTCATAGGCAGTATGATCTTTCGTTCAAATACTATTATGAAGAGGACACAACTCAAGTGTCTCCCTTCAATAAGGTTTTCAAAGTTTTTACCATTGAACAGGTTTATGAACCTGATGAAGTAGTTGCTACTAATTATGATGATGTTGGTAATGAAGTAGTTGGGCTTTCAAATCATGATGTCTTGGATGAAGTAATTAATGAAAATCTTTCCGCAACTTCTGAAGATCATGTTCGTCTTGATGAAAGGGTTGTGACAATTGATACCGAGAAAAAAAGAATGAGCTGTACATGTCGTATGTTTGAGAACAAAGGTTTTTTATGTCGTCATGTTTTCAGAATCTTAGAGTTTTTAGGTGGTTCTGTCCAATACCATGGTTTGAAAACAATACCTGCGGAATATGTTTTAAAGCGTTGGTGTAGAGATGCGCGTCAGTCGTTTGATAAGCTGAATTCCACTGTCAATGTTGCCACTGAAGCTACGACTCAAGCACAACGATATCAACAGATTTGTGCTGTTACAGTTCAGCTGTCTACACGTGTTTCCGTAGATCCTGAGGCTTCTCAAATTTTTCTTAATGGTGTTCTTGAAGCTGGGAAAAAAGCAGAGGAGTTGCTTATGCGTAAAGATATTGATACTGGCCCATCGTCCGGGACGCCATCTAAATCTTCCAATACAGCTGCTGCTAGTGAACCATCTGATGGGGTAAAGTCCACTGCTCCAAAATTCAAAGCAAGATCAAATCCAATTAGATCAAAGAAGCGACTTAAATCTGATTATGAATTGTCTAGAGATAGGCAAGAGAGGCGAGAGAGGCAAAAACTCATTATTCAGCGGAAGAATCAAATGAGAGATGATGAGGCTCAAAAGGGAAAAGAGGCTACTGATTGA 2160 0.3838 MLRSKKNSQNTPSDKVHYLRYVCNKQGYKKGSLLDPKNRPTSDSPVVVEFEKVKEKAEEMIGCTADIFLKLDETLNAYKIYKWDVSHCHPLHKAEHGRFLRSFREVNEVQGQLAVINFKAGMSMRTSYEVMGQGVGGTDNLPFRFSDLKNYLMTKRQKEMVVGEATVIQEFFRNEALSKPSFYYDIQVDAAEDIASIFWADGIMQLDYALFGDVISFDTTYRTNNQYRPLAALMGFDNHRKSVLFGAALLYDETAATFDWLFTTFLRCMANKKPKTIYTDQATALLKSVPNIFEDNEADFDYNWDQMMKNCFDGRPTSDFSWLVQTHKNRMHWSSAWVKSHFTAGLKTTQLSESFNAFLRGFLQPDHSLVRFFSHFNMMVQRMKDNHAEFDFKAANTRTKNNYPNSQLMRSVVNKYTSSSFAFIHRQYDLSFKYYYEEDTTQVSPFNKVFKVFTIEQVYEPDEVVATNYDDVGNEVVGLSNHDVLDEVINENLSATSEDHVRLDERVVTIDTEKKRMSCTCRMFENKGFLCRHVFRILEFLGGSVQYHGLKTIPAEYVLKRWCRDARQSFDKLNSTVNVATEATTQAQRYQQICAVTVQLSTRVSVDPEASQIFLNGVLEAGKKAEELLMRKDIDTGPSSGTPSKSSNTAAASEPSDGVKSTAPKFKARSNPIRSKKRLKSDYELSRDRQERRERQKLIIQRKNQMRDDEAQKGKEATD 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01300 719 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 6 624 IPR031052 GO:0006355
Trre11g01300 719 SMART 26again6 517 544 IPR006564 GO:0008270
Trre11g01300 719 MobiDBLite consensus disorder prediction 633 719 - -
Trre11g01300 719 Pfam SWIM zinc finger 518 534 IPR007527 GO:0008270
Trre11g01300 719 MobiDBLite consensus disorder prediction 675 719 - -
Trre11g01300 719 Pfam MULE transposase domain 214 293 IPR018289 -
Trre11g01300 719 ProSiteProfiles Zinc finger SWIM-type profile. 506 542 IPR007527 GO:0008270
Trre11g01300 719 MobiDBLite consensus disorder prediction 637 656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01300 Trre-Chr11 12788323 12791012 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre11g01300 MULE 9e-17 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01300 - - mtr:120577859 1099.73