Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01291 ATGGATAGTGAGAGATCAAATTTCAAGGTTTTGATTGTTGATCATGATGAGGCTTATTTGAAATATCTCTCTAATATCCTAATGGAATGGCAATGCATAGGTAAAACTGCTAAAGATGCTCAACAAGCTTTGGCCACTCTTCAAAATGATGGCCTTTATGATCTCATAATTTCAGAGTTCCATCTACTAGGAATGAATGGACTCGATTTTCAAAAGCATATATATATACAACACCAATTCCATATACCTATAATAATGATGTCTAAAGATAGCAGCCAACATTTGATCTCGAAGAGTTTAGAAAATGGAGCTGCACAGTTTATAGTGAAGCCCTTTTGTGCTGAAGATTTAAAAAACATCTGGAAGTGTGTTGCAGAAATTAAAAAACATAAACTATGTTGTAAGAGAAACAATACTAATGAATACCAAGGAGAGGAAGAATATCAAGTTGTGAAGAAACCAAGGCTTGTTTGGACAAGTTATCTTCACAATTTGTTTCTTCATGCTGTTAATCAAGTTGGATGGGAAAAAGCTAAGCCAAAGAAAATTCTGGAGATAATGAATATACCAAACTTGACACAGGCAAATGTAGCAAGTCACTTACAGAAATATCACCGATTTCGACGAGTTGTCTCCGATAAAGGAATGGCTGGGGGTATATGCAATAGAGCATTGAAATCAAAATTTGCTTCAGATATTCCAATGCCAATGGTAAAAGAAATTAAGGCAATGAGAGCTGCAAAAAAACTTTGCAAGCCGACAAGCGATAATTCGCAAGCATTATCATATCAAATGGAACATGATAACAATGTTCTTAACTTTGGTGGAGCTTCTTCAAGCTATTCTTCTTCTCCAAGTTTCAAGAGTTTGAAATTTGATAATTACCAAAATCATGGTTTGGTTAGAAGTCATAATGTGCAAAATTTGGATGTGGGAGGGTTCGGTTTCAACAATGTTTCTGATGTTAGGGGCAATAATACAAGTGAGTTTCAAGTTGCATCGAATAATGAAGGAAATGTTTATGAGAACATAGAATTTCAACAGCAGAAATTAGATAAAAATGTTACGGAAAATGAGCAGAACGATAATGTTGGTACTTCCATCAATGAGGTCGAGTTTAACCAAATGACATCTAACCTTTCTAATTTTTTGATGGCTGATGACATGAATGAGAAAAAGATGAATGTGAACCATGATGCAAGTGAATCTTTGAAATCATACATGTTCAATTACTTTCAAGATGTGCTACCCCTTGAGCAGTTAAATAAAAGTTGTGATGATGTATCTCCTTCGGCTGAAATTAATACATGTGTGTGGAACGAGTCACCAAAAAATTCAAGCCAAAACTCTAACCAGTTATATAATGGTGGAAATGATGTCTCTCCTCTAACTGGAATCACATCAACTATGCTAAGAGAGTCACCAAGTTCAAATCAAATCTCGAACCATTTGCAAGGAAATGAAATATTTTCAAATGGGGAAGCATCTAATAGGTTCATGGAGGACAACATGTCTAAAGCAAGTACCTCAGCTGCTACTGATCCGGAATTTGATATGGATCTTCTTGAAGCCTTGTTTGGTACTATAGAAGACTAG 1596 0.3528 MDSERSNFKVLIVDHDEAYLKYLSNILMEWQCIGKTAKDAQQALATLQNDGLYDLIISEFHLLGMNGLDFQKHIYIQHQFHIPIIMMSKDSSQHLISKSLENGAAQFIVKPFCAEDLKNIWKCVAEIKKHKLCCKRNNTNEYQGEEEYQVVKKPRLVWTSYLHNLFLHAVNQVGWEKAKPKKILEIMNIPNLTQANVASHLQKYHRFRRVVSDKGMAGGICNRALKSKFASDIPMPMVKEIKAMRAAKKLCKPTSDNSQALSYQMEHDNNVLNFGGASSSYSSSPSFKSLKFDNYQNHGLVRSHNVQNLDVGGFGFNNVSDVRGNNTSEFQVASNNEGNVYENIEFQQQKLDKNVTENEQNDNVGTSINEVEFNQMTSNLSNFLMADDMNEKKMNVNHDASESLKSYMFNYFQDVLPLEQLNKSCDDVSPSAEINTCVWNESPKNSSQNSNQLYNGGNDVSPLTGITSTMLRESPSSNQISNHLQGNEIFSNGEASNRFMEDNMSKASTSAATDPEFDMDLLEALFGTIED 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01291 531 Pfam Response regulator receiver domain 10 119 IPR001789 GO:0000160
Trre11g01291 531 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 337 IPR045279 GO:0009736
Trre11g01291 531 NCBIfam myb-like DNA-binding domain, SHAQKYF class 153 205 IPR006447 GO:0003677
Trre11g01291 531 Gene3D - 150 210 - -
Trre11g01291 531 ProSiteProfiles Response regulatory domain profile. 9 125 IPR001789 GO:0000160
Trre11g01291 531 SMART REC_2 8 121 IPR001789 GO:0000160
Trre11g01291 531 SUPERFAMILY Homeodomain-like 151 206 IPR009057 -
Trre11g01291 531 Gene3D - 7 145 - -
Trre11g01291 531 SUPERFAMILY CheY-like 6 131 IPR011006 -
Trre11g01291 531 FunFam Two-component response regulator 149 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01291 Trre-Chr11 12620181 12626471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01291 1 216 Response Regulator Gene Family AT4G31920 34.310 1.42e-32 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre11g01291 Response_reg 4.9e-18 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01291 - K14491 psat:127115658 347.051