Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01288 ATGTTCACTGGTAGTAGTAGTAGTAGCAGCTCTTCTTCCTCTTCACATCCCATATCATCAGAACCTTCCTCTTCTTCCCACACAATATCAATGCCGAATTTAGAAATCGCTCGTGGGGTGTCGTTTTCCAACGAGGAGGTGCGGTTAGCTGCGACTACCCCGAAGAAGCGTGCAGGAAGAAAGAAGTTCAAGGAGACTCGCCACGCGGTTTATAGAGGTGTCAGGAGAAGGAACTTAGATAAATGGGTATGTGAAATGAGGGAGCCAAACAAGAAGACTAAAATTTGGCTAGGGACTTTTCCAACGGCCGAAATGGCAGCCAGAGCACATGATGTGGCGGCATTGGCATTGAGAGGTCGCGACGCTTGTCTAAACTTTGCAGACTCGACTACGCGGCTTCCTATTCCTGCCACTACAGAGACAAGAGATATACAAAAGACGGCTGCAGAAGCAGCTGAGGCTTTTAGACCAGACAAGATTTTAATCTCTAACGACATTGACACGGCCGAAGCTTCCGCCGCCACGGAGGAGCAGCTTATGTTTAGTTTGGAAGAGGAAAAAGAGGAAGAGTTGAACATTCCAGAATCTTTGAGGAATATGGCACTAATGTCCCCTACACATAGCTTAGAGCATGGGTATGAACATATTAATGAAGATTTTCAAGATGTTGAGGTGTCACTATGGAGTTTTTCAATTTGA 699 0.4592 MFTGSSSSSSSSSSSHPISSEPSSSSHTISMPNLEIARGVSFSNEEVRLAATTPKKRAGRKKFKETRHAVYRGVRRRNLDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVAALALRGRDACLNFADSTTRLPIPATTETRDIQKTAAEAAEAFRPDKILISNDIDTAEASAATEEQLMFSLEEEKEEELNIPESLRNMALMSPTHSLEHGYEHINEDFQDVEVSLWSFSI 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01288 232 PIRSF PTI6 143 230 IPR017392 GO:0003700
Trre11g01288 232 PIRSF PTI6 1 177 IPR017392 GO:0003700
Trre11g01288 232 MobiDBLite consensus disorder prediction 1 31 - -
Trre11g01288 232 Coils Coil 166 186 - -
Trre11g01288 232 Gene3D AP2/ERF domain 70 128 IPR036955 GO:0003700|GO:0006355
Trre11g01288 232 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700|GO:0006355
Trre11g01288 232 PRINTS Ethylene responsive element binding protein signature 93 109 IPR001471 GO:0003700|GO:0006355
Trre11g01288 232 SMART rav1_2 70 133 IPR001471 GO:0003700|GO:0006355
Trre11g01288 232 FunFam Ethylene-responsive transcription factor 2 69 128 - -
Trre11g01288 232 Pfam AP2 domain 70 119 IPR001471 GO:0003700|GO:0006355
Trre11g01288 232 ProSiteProfiles AP2/ERF domain profile. 70 127 IPR001471 GO:0003700|GO:0006355
Trre11g01288 232 SUPERFAMILY DNA-binding domain 70 129 IPR016177 GO:0003677
Trre11g01288 232 CDD AP2 71 129 IPR001471 GO:0003700|GO:0006355
Trre11g01288 232 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 7 229 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01288 Trre-Chr11 12600194 12600892 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01288 48 230 AP2-EREBP Transcription Factor Family AT5G51990 53.807 6.68e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre11g01288 AP2 2.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01288 - K09286 psat:127130221 301.597