Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01287 ATGTTTCCAACTAACAGCTCTTCCTCTTCACACCCCAATTCCTCAATACCTTCCTCTTCCTCCCACAAAACATCTCTTCCGAATTTAGATGTCTCTCATGGTATGTCAACTTCCAACGAGGAGGTGCGGTTAGCTGCGAGTACCCCGAAGAAGCGTGGAGGGAGAAAGAAGTTCAAGGAGACTCGCCACCCGGTGTATAGAGGTGTGAGGACGAGGAACTTAGATAAATGGGTGTGTGAAATGAGAGAACCTAATAAAAAGACTAAGATTTGGCTAGGGACTTTTCCAACGGCCGAAATGGCAGCCCGAGCACATGATGTCGCGGCATTGGCATTGAGAGGTCGCAATGCTTGTCTCAACTTTGCAGACTCAGCTTGGCGGCTTCGTATGCCTGCCACTACCGAGACAAAAGACATTCAAAAGGCGGCTGCAGAAGCTGCGGAAGCTTTCAAACCAGATAAAACTTTAATGATTACTGACACGGTTGAAGTTGCCGCCGCTATAGAGGAGCGGCTTATGTTTAGTATGGAAGAGGAAGAAGAGGGAGAGTTGAACATTCCAGAATCATTGAGGAATATGGCACTAATGTCCCCAACACATAGCTTAGGGCATGAGTATGAACATATTGATCATGTAGACTTTCAAGATGTTGAGGTGTCACTATGGAGTTTTTCAATTTGA 681 0.4611 MFPTNSSSSSHPNSSIPSSSSHKTSLPNLDVSHGMSTSNEEVRLAASTPKKRGGRKKFKETRHPVYRGVRTRNLDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVAALALRGRNACLNFADSAWRLRMPATTETKDIQKAAAEAAEAFKPDKTLMITDTVEVAAAIEERLMFSMEEEEEGELNIPESLRNMALMSPTHSLGHEYEHIDHVDFQDVEVSLWSFSI 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01287 226 MobiDBLite consensus disorder prediction 1 58 - -
Trre11g01287 226 Pfam AP2 domain 64 114 IPR001471 GO:0003700|GO:0006355
Trre11g01287 226 Gene3D AP2/ERF domain 65 123 IPR036955 GO:0003700|GO:0006355
Trre11g01287 226 CDD AP2 66 124 IPR001471 GO:0003700|GO:0006355
Trre11g01287 226 SUPERFAMILY DNA-binding domain 65 124 IPR016177 GO:0003677
Trre11g01287 226 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700|GO:0006355
Trre11g01287 226 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Trre11g01287 226 FunFam Ethylene-responsive transcription factor 2 64 123 - -
Trre11g01287 226 MobiDBLite consensus disorder prediction 1 44 - -
Trre11g01287 226 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 13 224 IPR045277 GO:0003700
Trre11g01287 226 PIRSF PTI6 3 164 IPR017392 GO:0003700
Trre11g01287 226 PIRSF PTI6 154 226 IPR017392 GO:0003700
Trre11g01287 226 ProSiteProfiles AP2/ERF domain profile. 65 122 IPR001471 GO:0003700|GO:0006355
Trre11g01287 226 SMART rav1_2 65 128 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01287 Trre-Chr11 12592147 12592827 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01287 43 224 AP2-EREBP Transcription Factor Family AT5G51990 55.779 8.10e-66 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trre11g01287 AP2 1.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01287 - K09286 psat:127130221 309.686