Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01283 ATGTTTCCAACCGACAACTCTTCGTCTTCCTCGGACATTTCATTGTCGAATTCGGAGGGCTCTCATTGGATGCCTTTTTGTAACGAGAAGGTTCGGTTAGCTGCGACTACCCCGAAGAAGCGTGCGGGGAGGAAGATTTTCAAGGAGACTCGCCACCCAGTGTATAGGGGTGTGAGAAAGAGGAACAATGATAAATGGGTGTGTGAAATGAGGGAGCCTAACAAAAAGACTAAGATTTGGTTAGGGACTTTTCCAACGGTCGAGATGGCTGCCCGAGCCCATGATGTTGCTGCAATGGCATTAAGAGGCCGCTACGCCTGTCTCAACTTCGCAGACTCAGTATGGCGGCTCCCTAAACCTGCCACCGCTCAAGCAAAAGATATACAAAAGGCCGCTACACAAGCCGCCGAGGCATTCAGGCCAAAGAAGATTTTATTGACTAATGACAATGACATGACTGTAGTTGTCGCCGCCGCAGAGGAACAAGAACAACCTATGCCTTGTAGCGAAGAAGAAGAAGTGGGAGTGATAAACATGCCAGAGTTGTTGAGTAATATGGCAATAATGTCTCCTATGCATAGCTTGGAGAATGAGTTCTATGAAGAAGAAGTGATGAACATGCCTGAGTTGTGGAGCAACTTGGCACTAATGTCTCCTGCACATAGCTTGGAGTATTATGACTATGAATATGTTAATGAAGACTTTCAAGATGCTGAGATATCACTATGGAATTATTAA 738 0.458 MFPTDNSSSSSDISLSNSEGSHWMPFCNEKVRLAATTPKKRAGRKIFKETRHPVYRGVRKRNNDKWVCEMREPNKKTKIWLGTFPTVEMAARAHDVAAMALRGRYACLNFADSVWRLPKPATAQAKDIQKAATQAAEAFRPKKILLTNDNDMTVVVAAAEEQEQPMPCSEEEEVGVINMPELLSNMAIMSPMHSLENEFYEEEVMNMPELWSNLALMSPAHSLEYYDYEYVNEDFQDAEISLWNY 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01283 245 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Trre11g01283 245 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Trre11g01283 245 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Trre11g01283 245 FunFam Ethylene-responsive transcription factor 2 53 112 - -
Trre11g01283 245 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Trre11g01283 245 CDD AP2 55 113 IPR001471 GO:0003700|GO:0006355
Trre11g01283 245 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 6 245 IPR045277 GO:0003700
Trre11g01283 245 SUPERFAMILY DNA-binding domain 54 113 IPR016177 GO:0003677
Trre11g01283 245 Gene3D AP2/ERF domain 54 112 IPR036955 GO:0003700|GO:0006355
Trre11g01283 245 Pfam AP2 domain 53 103 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01283 Trre-Chr11 12554096 12554833 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01283 10 245 AP2-EREBP Transcription Factor Family AT4G25470 45.228 2.95e-59 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre11g01283 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01283 - K09286 mtr:25497250 278.87