Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01280 ATGTTTACCACCAACAACTCTTTCTCTTCGCACTATCCGTCTAACTCCGACACGTCATTGCCGAATTCAGTTACCAAAGTCGAGGTACGGTTAGCTGCCAGTACCCCGAAAAAGCGTGGTGGCAGGAAAAAGTTCAAGGAGACTCGCCACCCGGTATATAGGGGTGTGAGGACGAGGAACTTAGATAAATGGGTTTGTGAAATGAGGGAGCCTAATAAAAAGACTAAGATTTGGCTAGGGACTTTTCCAACTGCCGAGATGGCAGCCCGAGCACATGATGTTGCCTCAATGGCATTGAGGGGTCGCTACGCCTGCCTCAACTTTGCTGACTCGGCGTGGCGGCTCCCTAAACCTGCCACCACTCAGGCAAAAGATATACAAAAGACGGCTTCATTGGCCGCCGAAGCATTTAGACCGGTCAAGACTTTAATGACTAATGATATTGAAATGGATGTAGGTTTCTCCGCCAGAGAGGAGCAAAGTATGCTTTGTATTGAAGAGCAAGAAAAAGGAATGATGAACATGCCAGAATATTTTAGGGATATGGCTCTAATGTCCCCTACACATAGCTTTGGGTATCATGGGTATGAAGATATTCATTTAGAAGACTTTCAAGATGAAGAGGTATCACTATGGAATTTTTAA 645 0.4543 MFTTNNSFSSHYPSNSDTSLPNSVTKVEVRLAASTPKKRGGRKKFKETRHPVYRGVRTRNLDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVASMALRGRYACLNFADSAWRLPKPATTQAKDIQKTASLAAEAFRPVKTLMTNDIEMDVGFSAREEQSMLCIEEQEKGMMNMPEYFRDMALMSPTHSFGYHGYEDIHLEDFQDEEVSLWNF 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01280 214 Pfam AP2 domain 51 101 IPR001471 GO:0003700|GO:0006355
Trre11g01280 214 Gene3D AP2/ERF domain 52 110 IPR036955 GO:0003700|GO:0006355
Trre11g01280 214 FunFam Ethylene-responsive transcription factor 2 51 110 - -
Trre11g01280 214 CDD AP2 53 111 IPR001471 GO:0003700|GO:0006355
Trre11g01280 214 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Trre11g01280 214 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Trre11g01280 214 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Trre11g01280 214 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
Trre11g01280 214 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 10 213 IPR045277 GO:0003700
Trre11g01280 214 SUPERFAMILY DNA-binding domain 52 111 IPR016177 GO:0003677
Trre11g01280 214 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01280 Trre-Chr11 12529881 12530525 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01280 6 214 AP2-EREBP Transcription Factor Family AT5G51990 48.673 5.12e-61 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre11g01280 AP2 6.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01280 - K09286 mtr:25497250 314.309