Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g01279 ATGTATAGTAGTAAAATCTCTTCCTATTCACATCCCATATTTAAAGATTTCAATGGTGAAATGCGGTTAGCCGCGAGTAACCCGAAGAAACGAGCGGGGAGGAAGATATTCAAGGAAACTCGCCACCCGGTGTATAGGGGTGTGAGGAAGAGAAATTTAGATAAATGGGTTTGTGAAATGAGGGAGCCTAACAAAAAGACTAGGATTTGGCTAGGGACTTTTCCAACGGCTGAGATGGCAGCCCGAGCCCACGATGTTGCGGCTTTGGCATTGAGGGGCCGCTATGCCTGTCTCAATTTCGCAGACTCAGTGTGGCGTCTCCCTATTCCAACGACGTCTGAGACAAAAGATATTCAAAGGGCAGCCACAGAAGCGGCTGAGGCTTTTAGACCAGAAAAGATTTTAAGGACTAATGACATTGAAACAGTTATAGCTGTTGTCGCCGCAAAGGAGTTGAATATGTTTGGTATGGAAGTTGAAGAAGAGGATGAGGAAATGATGAATATGCCAGAATTATGGAGGAATATGGTGCTAATGTCCCCTGCACATAGCTTGGAGTATGAGTATGAAGACATTGATGTAGGTGAATTTGAAGATGTGTCACTATGGAACTTTTAA 618 0.4401 MYSSKISSYSHPIFKDFNGEMRLAASNPKKRAGRKIFKETRHPVYRGVRKRNLDKWVCEMREPNKKTRIWLGTFPTAEMAARAHDVAALALRGRYACLNFADSVWRLPIPTTSETKDIQRAATEAAEAFRPEKILRTNDIETVIAVVAAKELNMFGMEVEEEDEEMMNMPELWRNMVLMSPAHSLEYEYEDIDVGEFEDVSLWNF 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g01279 205 Gene3D AP2/ERF domain 44 102 IPR036955 GO:0003700|GO:0006355
Trre11g01279 205 SUPERFAMILY DNA-binding domain 44 103 IPR016177 GO:0003677
Trre11g01279 205 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Trre11g01279 205 CDD AP2 45 103 IPR001471 GO:0003700|GO:0006355
Trre11g01279 205 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 15 204 IPR045277 GO:0003700
Trre11g01279 205 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Trre11g01279 205 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Trre11g01279 205 FunFam Ethylene-responsive transcription factor 2 43 102 - -
Trre11g01279 205 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Trre11g01279 205 Pfam AP2 domain 43 93 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g01279 Trre-Chr11 12507328 12507945 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g01279 7 205 AP2-EREBP Transcription Factor Family AT4G25470 52.174 2.17e-66 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre11g01279 AP2 6.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g01279 - K09286 mtr:25497241 291.197